TCONS_00038514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038514
Unique NameTCONS_00038514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038514 ID=TCONS_00038514|Name=TCONS_00038514|organism=Clytia hemisphaerica|type=transcript|length=451bp
CAGGTTTAGATAAAGAGCTTGAAATATTCAGactttttggataaaaatta
gAGGGTGCGACGCCTTCCACCCAGTGAAATCAACAAAGATGAATAACTAA
GAAATTGAATCGTATGAACCATATTTTTATTCTGCTTATAGTTATAAACT
AGAAATTTTgaacaacaaaatattttgtacaaagatcattttttgttttg
atccgctgctttggctgttttttcacctttttggtCTTCAAACTTGATAT
CTTCTAGCCATGTTGGCAATTTTCTTCTGTAGCGAACTTTGTAAAGTTTT
CGGCGCTTGAACATTAATGAGCCATTTTCTTCATGAGTGACAATTTCATA
CTCTGTTTCGATGCCACTCGAATCGCCAGACTCCAAATAAACAACATCAC
CTACTCGCTTTGGCATTTTGATGTTCTCTCTTCAGTGTTTAAACgtaaaa
g
Run BLAST on NCBI

transcript from alignment at sc0001871:15684..16134

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038514 ID=TCONS_00038514|Name=TCONS_00038514|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0001871:15684..16134 (Clytia hemisphaerica)
cttttacGTTTAAACACTGAAGAGAGAACATCAAAATGCCAAAGCGAGTA
GGTGATGTTGTTTATTTGGAGTCTGGCGATTCGAGTGGCATCGAAACAGA
GTATGAAATTGTCACTCATGAAGAAAATGGCTCATTAATGTTCAAGCGCC
GAAAACTTTACAAAGTTCGCTACAGAAGAAAATTGCCAACATGGCTAGAA
GATATCAAGTTTGAAGaccaaaaaggtgaaaaaacagccaaagcagcgga
tcaaaacaaaaaatgatctttgtacaaaatattttgttgttcAAAATTTC
TAGTTTATAACTATAAGCAGAATAAAAATATGGTTCATACGATTCAATTT
CTTAGTTATTCATCTTTGTTGATTTCACTGGGTGGAAGGCGTCGCACCCT
ctaatttttatccaaaaagtCTGAATATTTCAAGCTCTTTATCTAAACCT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023097XLOC_023097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038514-exon-sc0001871-1491911889:15684..16134TCONS_00038514-exon-sc0001871-1491911889:15684..16134Clytia hemisphaericaexon
TCONS_00038514-exon-sc0001871-1510915933:15684..16134TCONS_00038514-exon-sc0001871-1510915933:15684..16134Clytia hemisphaericaexon
TCONS_00038514-exon-sc0001871-1575043694:15684..16134TCONS_00038514-exon-sc0001871-1575043694:15684..16134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001871supercontigsc0001871:15684..16134 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293204	0.14296	0.331981	0	31.6322	21.5592	34.6804	62.6408	19.8898	14.0781	14.5557	15.6218	0.780004	0.506276	0.0832456	0	0	0	0	0	0.141743	0	0	0	0	0.280952	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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