TCONS_00038511 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038511
Unique Name	TCONS_00038511
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	444

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001871:33012..37698-

transcript sequence

>TCONS_00038511 ID=TCONS_00038511|Name=TCONS_00038511|organism=Clytia hemisphaerica|type=transcript|length=444bp
CAGGCATTTTGGCTCGAGAAACAACGCCTACTTTTTACGCGCCAAAAATC
TTGAAGACACGTCTTACCTCAGCGAATGCCGAATGCCGAATCAGAAAGTA
TTAAAACGCGTTCACCATACATTGATTTAAAATCACTATCATATTGACCA
AAGCGCATCTGATGCTTTCAACGAATGGCAGTCTTCAATTACACTTAACA
TCCGCTATCAAGAAATGTTTGGGAAACGTTTCGAAACAGAATTTTAGTTG
CGTCCAAAGAAATACCAGTACCCGGGATGATATTCTCAATGGGATGAATT
TGGTGACCATGGAAAAAGTTGTTGCAGCGGTTTGCGAACGACAACCTGAC
CAAGAATACACAGACAGTCAAAGAGAAAAGAAGATTATCCTTAACTATCT
CTTTTTCAGCAGGTGAGATGAGGTTTTTGCTTCAATTGATGGGT

Run BLAST on NCBI

transcript from alignment at sc0001871:33012..37698-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038511 ID=TCONS_00038511|Name=TCONS_00038511|organism=Clytia hemisphaerica|type=transcript|length=4687bp|location=Sequence derived from alignment at sc0001871:33012..37698- (Clytia hemisphaerica)
CAGGCATTTTGGCTCGAGAAACAACGCCTACTTTTTACGCGCCAAAAATC
TTGAAGACACGTCTTACCTCAGCGAATGCCGAATGCCGAATCAGAAAGTA
TTAAAACGCGTTCACCATACATTGATTTAAAATCACTATCATATTGACCA
AAGCGCATCTGATGCTTTCAACGAATGGCAGTCTTCAATTACACTTAACA
TCNTTTTTATTTCAGACTCATCGATAATGAATTCCAATGGAAAGTTTTGA
TCAGAAAGTATTGACGCGTTCACCATACATTGATTTAAAATCACAATCAT
ATTGACCAAAGCGCACCTGATGCTTTCAACGAATGGCAGTCTTCAATTAC
ACTTAACATCCGCTATCAAGAAATGTTTGGGAAACGTTTCGAAACAGAAT
TTTAGTTGCGTCCAAAGAAATACCAGGTAAATAAAACAGTTATAGACACC
CTCTTCTCACAAACTTTTTCAGCCAGTGGTGGTAAAATTAATGGACTGAA
ACTCGAAGGGGACTGATATTCCTATGTTTTTTTATGGAATTTGAATAACA
TCATTTTTAAGCCATGAAATTAAGTCGGGATGGAAAAAAGTAGCATAATA
TTTTTGGGTCAAGTTGGAGTTTTTACAAGATATACTTACAAATCAGAGAT
GCTTAGAGCATTGAACTTTTTCCTATCATATACAATAGAATTGATTTATA
AAATACACAACTATGCCAACACTCGCCAAAGTATCTACATTCCCAGCTCC
CATGGTGCCGAAGTCCCGAGTTGAATTATGCCAACACTCGCCAAAGTATC
TACATTCCCAGCTCCCGTGGTGCCGAAGTCCCGAGTTGAATTATGCCAAC
ACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCCAATGTTCGGTCA
AGTCCAGCAACGTGATATAATCAATTCAAATATCCAAAATTCAAAAGAAA
GTAAGTCCAATGTTCGGTCAAGTCCAGCAACGTTTTTATCCAAAATGTAG
TCGATATAATCCAATATATTTTAATGATTAAGTAAGTTTTCCTTGAAGTT
ATCCAGTTTTTTCGTGAATGTGCTTCTCGATTTCAGATTTTCTTCTCATT
CGACCATGCTGATGCATAACACTGACCAAATCAAAAATGTTTTTTTTTTT
CAACAAAAGAAGTAAAAACAAACAATTACTATAAATAAATAGTAAAAAAT
TTTTTTTAAATTTATTTTGATCATTTATATTAAATTAATTTAGACTAATC
CTTAACAAAATGGACAACAATAGTTTTATATAAAGTCATGGTTTTGTTTC
TGTATACCATGAGGTCGCTTCGTCGCCTCACTATATTCTCCGCTTCGTGC
GTACTCGCTGATTTCTTCAACTCGGGACCTCGGGAGATCGGGACCTGAGT
GATATAGTTCAACTAGGGACCTCGGGACATCGGGACCTGGGGGTGTGGGT
TTTATTGGATGAAGAGAACATAGCTCAACTCGGGACTTTTGGAAATAATA
GTGATATAGTTCAACTAGGGACCTCGGAACTTTGGACCTGTTTACTTTTT
TGGAGAGAATATTGATATATATATATATAGTTCAACTCGGGATTTTGGAA
CCTGGGGTTAGAGAATTTTTGGAGGTATAACATATCGGGTGTGCTTGTTC
CGTAAAATACACACAAAGAAACTCGCATCCCAGCTTGTAAAAACTCCAGC
TCATCTGAATATTTTGAGTGAAAAAATTAAGAGTACAATTTTGCACTGGG
GACGATATTTTAGCCAATTTTTCCGCAGTGGAGAAGGGAGAACTGTTTGT
TGATACGACTAGATATTTTTACGTGTGTTGCTTAAGAGCCATTTTCTTAG
GGATATGGACAATTCGTCAGGAAGAAATTTCCTCAGAATTGCTTCATTTT
CAAATATTTAGTTCAAAACCATGATTGATGCAACTTGTAGGACTTTCTTT
TTTCTTTGTAATATAATATGGAACTACTATTTGATACTTCACGTGAAAAT
TTGAGTCCTGAAAACCATGGGCTAACTTAAGAAAAACTAAAATATTTTAG
AGGTCATTTTCTTGCAAGGCTCTCACTACGACATGTTGGTTTTTGTATTT
TTAGTCGTTTTTGTAGTCTTTAGTAGATATGNTGAGTCCTGAAAACCATG
GGCTAACTTAAGAAAAACTAAAATATTTTAGAGGTCATTTTCTTGCAAGG
CTCTCACTACGACATGTTGGTTTTTGGATTTTTAGTCGTTTTTGTAGTCT
TTAGTAGATATGTTTTTTTTTTTGGTAGTGAAGAAGTGGGTTAGGACGGC
GGCTTAAAAATGACCTTTAACGTAAAATCGCCATTCTTCCCCAGTCCATT
TAAGCCAAGGTCCTCAGTTGTGAGGTGTTTATTAGGTTGTTTTGGACTCT
CCAGACAGATATACGTTTTGACAGTCGAAAAAAGTCCAAAGATTTCCATG
TGGTCTAGCCTCGTTAGACCTGTTGAAGGCCGAGAAACTAGGCTTTTTAG
CTTACGCAGGATTGCCCTTAGCAATCTTAGTAAACAATTATAATAAATAG
TGACAGAGATTACAAACCACTGTACGAAATTGTACCGATTTTTTGAATGG
CCGCCCTGTGATTTATGTTGTTTACTATGTCTGTGTTTTTCATGTAACTA
AAGTAACGATTTGTAAATTTACGAATCATTTACATCTGTTCCTATTTTAT
TTTAATTATAGTACCCGGGATGATATTCTCAATGGGATGAATTTGGTGAC
CATGGAAAAAGTTGTTGCAGCGGTTTGCGAACGACAACCTGACCAAGAAT
ACACAGACAGTCAAAGAGAAAAGAAGATTATCCTTAACTATCTCTTTTTC
AGCAGGTGAGATGAGGTTTTTGCTTCAATTGATGGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023094	XLOC_023094	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038511-exon-sc0001871-1575043694:37500..37698	TCONS_00038511-exon-sc0001871-1575043694:37500..37698	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1575043694:37273..37341	TCONS_00038511-exon-sc0001871-1575043694:37273..37341	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1575043694:33012..33187	TCONS_00038511-exon-sc0001871-1575043694:33012..33187	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1510915933:37500..37698	TCONS_00038511-exon-sc0001871-1510915933:37500..37698	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1510915933:37273..37341	TCONS_00038511-exon-sc0001871-1510915933:37273..37341	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1510915933:33012..33187	TCONS_00038511-exon-sc0001871-1510915933:33012..33187	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1491911889:37500..37698	TCONS_00038511-exon-sc0001871-1491911889:37500..37698	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1491911889:37273..37341	TCONS_00038511-exon-sc0001871-1491911889:37273..37341	Clytia hemisphaerica	exon
TCONS_00038511-exon-sc0001871-1491911889:33012..33187	TCONS_00038511-exon-sc0001871-1491911889:33012..33187	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001871	supercontig	sc0001871:33012..37698 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86333	1.76769	0	0.909061	0	0	2.45293	0	2.29974	2.18299	4.29154	3.30357	3.66642	7.57018	7.22826	10.391	5.66004	9.96885	2.86633	7.77972	2.98079	2.75145	1.2532	1.06747	0	0	3.52087	4.11912	2.34123	4.35745

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00038511 vs. Swiss-Prot (Human)

BLAST of TCONS_00038511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00038511 (transcript) - C. hemisphaerica