TCONS_00038510 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038510
Unique Name	TCONS_00038510
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	430

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001871:33012..37684-

transcript sequence

>TCONS_00038510 ID=TCONS_00038510|Name=TCONS_00038510|organism=Clytia hemisphaerica|type=transcript|length=430bp
CGAGAAACAACGCCTACTTTTTACGCGCCAAAAATCTTGAAGACACGTCT
TACCTCAGCGAATGCCGAATGCCGAATCAGAAAGTATTAAAACGCGTTCA
CCATACATTGATTTAAAATCACAATCATATTGACCAAAGCGCACCTGATG
CTTTCAACGAATGGCAGTCTTCAATTACACTTAACATCCGCTATCAAGAA
ATGTTTGGGAAACGTTTCGAAACAGAATTTTAGTTGCGTCCAAAGAAATA
CCAGTACCCGGGATGATATTCTCAATGGGATGAATTTGGTGACCATGGAA
AAAGTTGTTGCAGCGGTTTGCGAACGACAACCTGACCAAGAATACACAGA
CAGTCAAAGAGAAAAGAAGATTATCCTTAACTATCTCTTTTTCAGCAGGT
GAGATGAGGTTTTTGCTTCAATTGATGGGT

Run BLAST on NCBI

transcript from alignment at sc0001871:33012..37684-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038510 ID=TCONS_00038510|Name=TCONS_00038510|organism=Clytia hemisphaerica|type=transcript|length=4673bp|location=Sequence derived from alignment at sc0001871:33012..37684- (Clytia hemisphaerica)
CGAGAAACAACGCCTACTTTTTACGCGCCAAAAATCTTGAAGACACGTCT
TACCTCAGCGAATGCCGAATGCCGAATCAGAAAGTATTAAAACGCGTTCA
CCATACATTGATTTAAAATCACTATCATATTGACCAAAGCGCATCTGATG
CTTTCAACGAATGGCAGTCTTCAATTACACTTAACATCNTTTTTATTTCA
GACTCATCGATAATGAATTCCAATGGAAAGTTTTGATCAGAAAGTATTGA
CGCGTTCACCATACATTGATTTAAAATCACAATCATATTGACCAAAGCGC
ACCTGATGCTTTCAACGAATGGCAGTCTTCAATTACACTTAACATCCGCT
ATCAAGAAATGTTTGGGAAACGTTTCGAAACAGAATTTTAGTTGCGTCCA
AAGAAATACCAGGTAAATAAAACAGTTATAGACACCCTCTTCTCACAAAC
TTTTTCAGCCAGTGGTGGTAAAATTAATGGACTGAAACTCGAAGGGGACT
GATATTCCTATGTTTTTTTATGGAATTTGAATAACATCATTTTTAAGCCA
TGAAATTAAGTCGGGATGGAAAAAAGTAGCATAATATTTTTGGGTCAAGT
TGGAGTTTTTACAAGATATACTTACAAATCAGAGATGCTTAGAGCATTGA
ACTTTTTCCTATCATATACAATAGAATTGATTTATAAAATACACAACTAT
GCCAACACTCGCCAAAGTATCTACATTCCCAGCTCCCATGGTGCCGAAGT
CCCGAGTTGAATTATGCCAACACTCGCCAAAGTATCTACATTCCCAGCTC
CCGTGGTGCCGAAGTCCCGAGTTGAATTATGCCAACACTCNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAGTCCAATGTTCGGTCAAGTCCAGCAACGTG
ATATAATCAATTCAAATATCCAAAATTCAAAAGAAAGTAAGTCCAATGTT
CGGTCAAGTCCAGCAACGTTTTTATCCAAAATGTAGTCGATATAATCCAA
TATATTTTAATGATTAAGTAAGTTTTCCTTGAAGTTATCCAGTTTTTTCG
TGAATGTGCTTCTCGATTTCAGATTTTCTTCTCATTCGACCATGCTGATG
CATAACACTGACCAAATCAAAAATGTTTTTTTTTTTCAACAAAAGAAGTA
AAAACAAACAATTACTATAAATAAATAGTAAAAAATTTTTTTTAAATTTA
TTTTGATCATTTATATTAAATTAATTTAGACTAATCCTTAACAAAATGGA
CAACAATAGTTTTATATAAAGTCATGGTTTTGTTTCTGTATACCATGAGG
TCGCTTCGTCGCCTCACTATATTCTCCGCTTCGTGCGTACTCGCTGATTT
CTTCAACTCGGGACCTCGGGAGATCGGGACCTGAGTGATATAGTTCAACT
AGGGACCTCGGGACATCGGGACCTGGGGGTGTGGGTTTTATTGGATGAAG
AGAACATAGCTCAACTCGGGACTTTTGGAAATAATAGTGATATAGTTCAA
CTAGGGACCTCGGAACTTTGGACCTGTTTACTTTTTTGGAGAGAATATTG
ATATATATATATATAGTTCAACTCGGGATTTTGGAACCTGGGGTTAGAGA
ATTTTTGGAGGTATAACATATCGGGTGTGCTTGTTCCGTAAAATACACAC
AAAGAAACTCGCATCCCAGCTTGTAAAAACTCCAGCTCATCTGAATATTT
TGAGTGAAAAAATTAAGAGTACAATTTTGCACTGGGGACGATATTTTAGC
CAATTTTTCCGCAGTGGAGAAGGGAGAACTGTTTGTTGATACGACTAGAT
ATTTTTACGTGTGTTGCTTAAGAGCCATTTTCTTAGGGATATGGACAATT
CGTCAGGAAGAAATTTCCTCAGAATTGCTTCATTTTCAAATATTTAGTTC
AAAACCATGATTGATGCAACTTGTAGGACTTTCTTTTTTCTTTGTAATAT
AATATGGAACTACTATTTGATACTTCACGTGAAAATTTGAGTCCTGAAAA
CCATGGGCTAACTTAAGAAAAACTAAAATATTTTAGAGGTCATTTTCTTG
CAAGGCTCTCACTACGACATGTTGGTTTTTGTATTTTTAGTCGTTTTTGT
AGTCTTTAGTAGATATGNTGAGTCCTGAAAACCATGGGCTAACTTAAGAA
AAACTAAAATATTTTAGAGGTCATTTTCTTGCAAGGCTCTCACTACGACA
TGTTGGTTTTTGGATTTTTAGTCGTTTTTGTAGTCTTTAGTAGATATGTT
TTTTTTTTTGGTAGTGAAGAAGTGGGTTAGGACGGCGGCTTAAAAATGAC
CTTTAACGTAAAATCGCCATTCTTCCCCAGTCCATTTAAGCCAAGGTCCT
CAGTTGTGAGGTGTTTATTAGGTTGTTTTGGACTCTCCAGACAGATATAC
GTTTTGACAGTCGAAAAAAGTCCAAAGATTTCCATGTGGTCTAGCCTCGT
TAGACCTGTTGAAGGCCGAGAAACTAGGCTTTTTAGCTTACGCAGGATTG
CCCTTAGCAATCTTAGTAAACAATTATAATAAATAGTGACAGAGATTACA
AACCACTGTACGAAATTGTACCGATTTTTTGAATGGCCGCCCTGTGATTT
ATGTTGTTTACTATGTCTGTGTTTTTCATGTAACTAAAGTAACGATTTGT
AAATTTACGAATCATTTACATCTGTTCCTATTTTATTTTAATTATAGTAC
CCGGGATGATATTCTCAATGGGATGAATTTGGTGACCATGGAAAAAGTTG
TTGCAGCGGTTTGCGAACGACAACCTGACCAAGAATACACAGACAGTCAA
AGAGAAAAGAAGATTATCCTTAACTATCTCTTTTTCAGCAGGTGAGATGA
GGTTTTTGCTTCAATTGATGGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023094	XLOC_023094	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038510-exon-sc0001871-1575043694:37579..37684	TCONS_00038510-exon-sc0001871-1575043694:37579..37684	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1575043694:37273..37420	TCONS_00038510-exon-sc0001871-1575043694:37273..37420	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1575043694:33012..33187	TCONS_00038510-exon-sc0001871-1575043694:33012..33187	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1510915933:37579..37684	TCONS_00038510-exon-sc0001871-1510915933:37579..37684	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1510915933:37273..37420	TCONS_00038510-exon-sc0001871-1510915933:37273..37420	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1510915933:33012..33187	TCONS_00038510-exon-sc0001871-1510915933:33012..33187	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1491911889:37579..37684	TCONS_00038510-exon-sc0001871-1491911889:37579..37684	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1491911889:37273..37420	TCONS_00038510-exon-sc0001871-1491911889:37273..37420	Clytia hemisphaerica	exon
TCONS_00038510-exon-sc0001871-1491911889:33012..33187	TCONS_00038510-exon-sc0001871-1491911889:33012..33187	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001871	supercontig	sc0001871:33012..37684 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.26062	5.06621	3.01059	0	18.2989	12.2331	10.847	16.4991	6.40266	5.0537	4.00081	5.64822	6.826	5.28481	2.93367	2.49981	5.08406	1.98871	5.31116	0	3.93918	4.66012	3.43198	5.84233	16.472	16.1031	2.86828	0	5.44626	5.00465

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00038510 vs. Swiss-Prot (Human)

BLAST of TCONS_00038510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00038510 (transcript) - C. hemisphaerica