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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038509 ID=TCONS_00038509|Name=TCONS_00038509|organism=Clytia hemisphaerica|type=transcript|length=3169bp
NNCGCAGCGCCCTCTGCCAATCATCTGTTGTATATTTTGAGTAAATGAAT
ATCTACGCTCATGGTATCAACCATGAAGTTTGGAGCTCGATGGTTACATA
CGGCTGACGGTATTTATCAGACCTAATTCGAAAATGGCAAACAATCGATC
TTGGAATGATCTCTAACAGGATACGAACTTGTGGCATGAGCATCCCCATG
GCTTCAACAACCTGGATTCGATTGGTGGATGAAATTTGTGATAATAATGG
AATTGCTTTGACATAGCTGATGGATGTTGTCTTCTCCGTAGATGCATTTA
CTTGCTTGGTGATTGTTGCGAACCATTGGTGTATTTATAAGAGTATTCGA
TGCAGTCGTTGAGGTGTGATATGATATGCTGATGGATGGATTATCTTGAA
GTGATTTCTTTGGTTGAAAGATGACCTCTTTTAGCCCAGTCATCAACCGT
GGCCAATGCTGCTTGGCCAGTGTTAAAAATCAGATCGTTCATTTCTTGGA
ATGAAAAATCGTCATTTGAAGAGCGACTGTTAAATGAAGTTGTCTCGATA
TCAATTCTGTAATATTGGTTACCAATTCTTTGGTTCTTTTTGCCTATTGA
TTAAACTATTTTGATGGGTTAACTTATTAGTGTTCTAATCAATGATTTGT
GTAGAATTTAAGCACCCCAAAAAAGCCTACATTTTGACTCAGCAGGATTT
TGTTGGGGTTTTAGTTTGTCCCAAGCATTCAAACCTTATTTGTGTGAAAG
GAGACATATTTTCAAAGAGTTTACTTGAATCATTTATCACAATTAGTGTT
TTGACTAAGTGTAAATAATTATTTGTGGCCTGAAAGGGACTTTTCTTAAA
ATCGAACTTCTTTTTGGACTTAAAATCACTGCCATGAAATTCGAGTTTTG
TGATAGTATAACTAAATTCTAGATGAAGTTTTTATTTGTCAGAATCGATT
GTTATCAGCGTTTTACAACTACATTTAGTAAGGCTGGACttgaaaaattg
ttggtttACCGTCAcccctgccgacccaaaaagttttattgccattttaa
agaagaaattttttttcttcaaaaaaaaaaccttcaaacaatcaaatcaa
aacccGTATCTTGtctgtctcaagcataagaatcgtgaATTCCCTGCTAG
CGCTCTTCTgttttccattcaaaattacctaaatgtaaacaaactgtttt
aACCCTTCCAtgtacgaaaatttcataaatcgtcaaataaaataaatttc
cgaccgaccgacccacctctAAAATCTAGCGTCGGGTGAAGGTAAactaa
caattttttaagttcaGTCTAATGGGCCATTTCatttatatccatacatg
ggattggacgaacatttccagggtgatctccaaaaaaatttccagggggg
tccAAGGTTCCTTTACGAACTTTTTTCAGGGAGTTGTTTTCCAAGGGGTT
GGATGACTAAGCATCTAAATTTCCTTTGGGCATGAATAATTGGCTCGTTT
ATTATCTAATGTTCAAAGTTCCAGGACCCTAATTTGATTATAAAAAactt
attctaaaatttccaaagGGTAAAAGATGGATTTCATTCGTCCTTTCTCA
ATATCTTGATTAAAGAAGGATTTTTCGATGGACAATAGAATccttttttc
cagatttttgcaaattttgccattatTAAAGCAAATATATGTACAATTTC
GTTAATTCTTTTGGCTTAAAAAGATTCGTCATGTGTTTCCTGTATGGATA
TCAAATGAAATAGCTCAATGGtcttattttatttgatttcgTTCATTTTC
TCAGTCTGGTAAAGCCCTTTCGTTAGGAGTTAGGAAATCAAGCAATCTtt
atatttttgccaacaaggCACTCTATCCTATCTGCCAACGAGAGGTGAAA
GAGCTGCTCTGATTACAAAGCTAAATTGATCCTAGTGACATTCTGAATGG
GCTGGGTACAAAGGAAGGGAAATGGTAGAAGTGTCACTCACCATTTTCTC
AATGGCTAATACTTGAATATTTTTGCAGACTATTATTTTGTagcttttgt
ttttgcttttcaTCTAGTAGCCTTTTAGACCTCAATATTCCATTTTGATC
AAATACTCTTGACAGacaaaactcgaaaaattacTTTCTTCGAAATTCTG
TATATGAATTACCtggtcaaaaaaagtttttggagTGGAAGTTTTGTCTG
TTAAGGGAGTGCAACAAACGTTACTTAGCCTAATAGTTCGGACGGTATTT
TGGGAATTTTCTTTCGTAAATCTTCCTCCGAAATCTTAAGGTTCAGAAAC
TTTAAGGAAAGGTTTGTTTATGATGATTTTGTGATGAGACCGGGGAAAGG
ATGTACATATTGAATACAAATCCATTGGATGGAATTTTTCACCAACGTTT
GAACTTTCTCTGTGACCATTTACTTTATGCACAGGTGTTTATTTCCTTCA
TCAAACTTCATTATCGCTAAAAAGGTTTTACCTAAAAGTTGGCTCTCCCC
ATTATCGCGAAAAAGGCGTTCCCTCCAATAGGTTGTACAGAGCACTTTGC
TTCCTAATTTAAGTGATTTATCACGAAATTCACGAAAGCATTCTTGTCTG
TTAGTGTCCGTTTCTTTCCCCTCcttcagatttttgaaaacttttgtttt
gaaaccCCTCCCCTTTTGGGAATTGTTAAAGTCAATGAACCCAAATGTCA
ACAATTTAAAGACAGTTTATCGAATTATATTTTGCCGAATCTTTCTGAAT
ATTTTTCACACATTTCCCCAGAGATCTtaaacacatttttttcttttata
agcataacgtttataagcatatgcagagtcagtttttggtacctagaCAA
TGGCTCTAttatttgagaacaatagaatgctaagcataatgcgagcctga
tatagggacatacacttgcttatagaaaaacatgtattttcatatgagtt
taaaaaaaactgtttaaTGGACTCTCACTAATTCGAGCTCCCGTTCGTAA
ATCTTCTTAATTTGCACCTCTTTACAGACTACTATTCAAGTTCGAATTAG
TGGGAATTTGTTTTGGAGAATAGAAAATCTATGTTTTGAGTATTATAATG
TAAGATATTTTATGGCCGATTTTTACAACtccaatcaaaaattttcctac
tctcgggtacctaataaat Run BLAST on NCBI transcript from alignment at sc0001871:24898..31517- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038509 ID=TCONS_00038509|Name=TCONS_00038509|organism=Clytia hemisphaerica|type=transcript|length=6620bp|location=Sequence derived from alignment at sc0001871:24898..31517- (Clytia hemisphaerica)
NNCGCAGCGCCCTCTGCCAATCATCTGTTGTATATTTTGAGTAAATGAAT
ATCTACGCTCATGGTATCAACCATGAAGTTTGGAGCTCGATGGTTACATA
CGGCTGACGGTATTTATCAGGTAAATAATTTTGTGATCATATTAGATTTC
AACAATAACGAGGGGGTTTATCTAAAGAATCCTGCATTACTAAAAATAGA
CAAAAAGAACGACAAATTTCATAAAAAACGACATATTTCGCCGTCCACAA
CCCCGACCGAAAGTGACTGTAACACCCCTAGCGATTCATTCCCTTTCGTT
TATCACGGGAATTAATTACATGTGGTCTAAAAGAACGACAAATTACGCAT
GCGTGTTACAATGCAGGATCCTTNNNNNNNNNNNNNNNNNNNNNGATTCA
TTCCCTTTCGTTTATCACGGGAATTAATTACATGTGGTCTAAAAGAACGA
CAAATTACGCATGCGTGTTACAATGCAGGATCCTTTAGAGGAACAAACAA
TAACCTACAAACGCGTGGTTACTGGAGAGTGATCGAATTGAAACCCCGAC
GTTGTCCCCACGAACCAGTGTAGACTTGATAGCCCAGTCGGTAGCGCAGT
TGAACTAGTAATGCGAAAGTCGTGAAATTCCACCCTTTTGGTCAAACATC
TAAATACGAGATTAAATTTCAAGCAGGGGGGGGTACCAAGTCAGTGTACT
GGACCATAGGGTACTAACTTGATTTTTGGATTTTTTTCCAAAAAATTAGA
CCACCACCCTTTTTAGTACACTGTACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTCACGGCCGGGGCTTTGACACCACCCTTTTAGTACACTGT
ACTAACTTTCTTCCACAGCCGGAGCTTTGATACCACCCTTTCAGTACACT
GTACTAGCTGTTTTTTCGATCAGATAAGTTTAGAAACCACCCCTTATAGT
GCACTGTTCTAATTTCTTTTTGTCCAAATAAGTTTAATTGCCAGCATATA
CAAGGGTTTTGAAGCATTTTGCTAAGAAAAGCACCAAAATAAAAAAGGAA
AGATTTGAATATTAAAATACTTGAATCCTTATATAGTACAAACACTGAAA
CAATGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACT
CAAAACCAACTTTGAGTTATTTCCCTTCTTGTGACTTGATTTCTGATTGT
CTGGCAAGCTGTAGCAGTTTTTCTTTTTTGAAAAATAAAAATAAAAGACT
TATATAATAACATTGTACACAAGCTGAAACGGAAAATCTTTTATCAAATG
TAATACAAAATATATAAAAAGGTGCTTTCCCTGTAAAATTTTATAAAATA
TCAAATTTTGAGGTAAAATTTGAGAAATTTCAAAAGATTTTGCTCTGAAA
GGGCAAAAAAATTCAAAAAATTACACTATAAGGGGCGCTTTTCAGCCAAA
TTTTTCCTGCACTGTAAGGGACCAATTTTAGAGACCTGATTTTTGGCCGA
ACGTACGGTCGTTTTCACCCCCTCCCCCTGGTGATTTCACTTATATACAG
ATTTTTTTCAATTAACATCAATCCAACAAGGTTACTAAAAACATAAAACA
ATAGAGCGGATTTTCTTTACTAAAACTTGAAAGCTTCGATTCGAACGTTT
ACACAAATTCTTGTTGTTGCCGTAATGTAGATAGGGCCTTAAAGAAAACG
TAAACAAGATTGAACTTAAGGCCGGTTTCCACTTGCGCATGCTGCGAATC
TTAAACAAATCCAATCAAGTAAACAGGAAAAATTGGGAGAAAATCAGTGT
ACCAATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGGACCAGCT
TGGACCTGGCAAATTAGGGCAAATATACATGGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCT
TCATTGTATTTTTCTCAGAGGACCACCCTTTTAGTACACTGTACTAACTC
AATTTAACCTAAAAAATACACCACCCCACCAGCTATGGGCCAGTACACTN
CACGAACCAGTGTAGACTTCATAGCACAGTCGGTAGCGCAGTTGAACTAG
TAATGCGAAAGTCGTGAAATTCCACCCATTTGGTCAAACATCTAAATACG
AGATTAAATTTCAAGGCAACTTCATTTATCTTCTTTAAAAAGATTTTAAA
TTTGAGGTATCTTACATAGGCTGTATTTTTGTATAATAGACCTAATTCGA
AAATGGCAAACAATCGATCTTGGAATGATCTCTAACAGGTTAGATTTGGG
TTTATTTGTCTATGGAACCGCGATTATACAGACTCTTACCCTCGATCTGT
TTTTATATGTTCACCTTAGTACATCTAATAGTATGATGCTAACGATGTTA
GAAGTAAAGANTCCTTGGTAATTTTAAAGCCGGTACCCGGTACTAAAAAG
GGGGTGGGGTCCCTTTTTCCTTAAGAAAAAGTAAGTACCCGGTACTAAAA
AGGGGGTGGTGGTACCTAAGACAATTTTTCTTAAAAACCAGGTTAGTACC
CTATGGGTTAGTACCCTGCGGCTGTACCCCCCCCCCCTGGAAAACAAACA
ACATAATTATGGTCGAAGGCTTTAACAATAACCTTAATCAAAGGGTCGTT
ACGAAGTCCTGTAATTCTCGTTTTATTGGATNACCCCCCCCCCCTGGAAA
ACAAGCAATATAATTATAGTCGAAGGCTTTAACAATAACCTTAATCAAAG
GGTCGTTACGAAATCCTGTAATTCTCGTTTTATTGGATTCTTAAGCCACG
ATGTTTGTTCGATTACCACTCTCGAATTTCTCAATTAGATCTTCTATTGT
GAATGATAGTAGAATCGAAACTTCCCTTCAACAAGTCCCACATTGATTTG
GTAAATTGTTAATTTTGAGTTTTGTAAGAGGACGTTCAAAATTTAACATT
TTCTCTATATTTTATTCCAGGATACGAACTTGTGGCATGAGCATCCCCAT
GGCTTCAACAACCTGGATTCGATTGGTGGATGAAATTTGTGATAATAATG
GAATTGCTTTGACATAGCTGATGGATGTTGTCTTCTCCGTAGATGCATTT
ACTTGCTTGGTGATTGTTGCGAACCATTGGTGTATTTATAAGAGTATTCG
ATGCAGTCGTTGAGGTGTGATATGATATGCTGATGGATGGATTATCTTGA
AGTGATTTCTTTGGTTGAAAGATGACCTCTTTTAGCCCAGTCATCAACCG
TGGCCAATGCTGCTTGGCCAGTGTTAAAAATCAGATCGTTCATTTCTTGG
AATGAAAAATCGTCATTTGAAGAGCGACTGTTAAATGAAGTTGTCTCGAT
ATCAATTCTGTAATATTGGTTACCAATTCTTTGGTTCTTTTTGCCTATTG
ATTAAACTATTTTGATGGGTTAACTTATTAGTGTTCTAATCAATGATTTG
TGTAGAATTTAAGCACCCCAAAAAAGCCTACATTTTGACTCAGCAGGATT
TTGTTGGGGTTTTAGTTTGTCCCAAGCATTCAAACCTTATTTGTGTGAAA
GGAGACATATTTTCAAAGAGTTTACTTGAATCATTTATCACAATTAGTGT
TTTGACTAAGTGTAAATAATTATTTGTGGCCTGAAAGGGACTTTTCTTAA
AATCGAACTTCTTTTTGGACTTAAAATCACTGCCATGAAATTCGAGTTTT
GTGATAGTATAACTAAATTCTAGATGAAGTTTTTATTTGTCAGAATCGAT
TGTTATCAGCGTTTTACAACTACATTTAGTAAGGCTGGACTTGAAAAATT
GTTGGTTTACCGTCACCCCTGCCGACCCAAAAAGTTTTATTGCCATTTTA
AAGAAGAAATTTTTTTTCTTCAAAAAAAAAACCTTCAAACAATCAAATCA
AAACCCGTATCTTGTCTGTCTCAAGCATAAGAATCGTGAATTCCCTGCTA
GCGCTCTTCTGTTTTCCATTCAAAATTACCTAAATGTAAACAAACTGTTT
TAACCCTTCCATGTACGAAAATTTCATAAATCGTCAAATAAAATAAATTT
CCGACCGACCGACCCACCTCTAAAATCTAGCGTCGGGTGAAGGTAAACTA
ACAATTTTTTAAGTTCAGTCTAATGGGCCATTTCATTTATATCCATACAT
GGGATTGGACGAACATTTCCAGGGTGATCTCCAAAAAAATTTCCAGGGGG
GTCCAAGGTTCCTTTACGAACTTTTTTCAGGGAGTTGTTTTCCAAGGGGT
TGGATGACTAAGCATCTAAATTTCCTTTGGGCATGAATAATTGGCTCGTT
TATTATCTAATGTTCAAAGTTCCAGGACCCTAATTTGATTATAAAAAACT
TATTCTAAAATTTCCAAAGGGTAAAAGATGGATTTCATTCGTCCTTTCTC
AATATCTTGATTAAAGAAGGATTTTTCGATGGACAATAGAATCCTTTTTT
CCAGATTTTTGCAAATTTTGCCATTATTAAAGCAAATATATGTACAATTT
CGTTAATTCTTTTGGCTTAAAAAGATTCGTCATGTGTTTCCTGTATGGAT
ATCAAATGAAATAGCTCAATGGTCTTATTTTATTTGATTTCGTTCATTTT
CTCAGTCTGGTAAAGCCCTTTCGTTAGGAGTTAGGAAATCAAGCAATCTT
TATATTTTTGCCAACAAGGCACTCTATCCTATCTGCCAACGAGAGGTGAA
AGAGCTGCTCTGATTACAAAGCTAAATTGATCCTAGTGACATTCTGAATG
GGCTGGGTACAAAGGAAGGGAAATGGTAGAAGTGTCACTCACCATTTTCT
CAATGGCTAATACTTGAATATTTTTGCAGACTATTATTTTGTAGCTTTTG
TTTTTGCTTTTCATCTAGTAGCCTTTTAGACCTCAATATTCCATTTTGAT
CAAATACTCTTGACAGACAAAACTCGAAAAATTACTTTCTTCGAAATTCT
GTATATGAATTACCTGGTCAAAAAAAGTTTTTGGAGTGGAAGTTTTGTCT
GTTAAGGGAGTGCAACAAACGTTACTTAGCCTAATAGTTCGGACGGTATT
TTGGGAATTTTCTTTCGTAAATCTTCCTCCGAAATCTTAAGGTTCAGAAA
CTTTAAGGAAAGGTTTGTTTATGATGATTTTGTGATGAGACCGGGGAAAG
GATGTACATATTGAATACAAATCCATTGGATGGAATTTTTCACCAACGTT
TGAACTTTCTCTGTGACCATTTACTTTATGCACAGGTGTTTATTTCCTTC
ATCAAACTTCATTATCGCTAAAAAGGTTTTACCTAAAAGTTGGCTCTCCC
CATTATCGCGAAAAAGGCGTTCCCTCCAATAGGTTGTACAGAGCACTTTG
CTTCCTAATTTAAGTGATTTATCACGAAATTCACGAAAGCATTCTTGTCT
GTTAGTGTCCGTTTCTTTCCCCTCCTTCAGATTTTTGAAAACTTTTGTTT
TGAAACCCCTCCCCTTTTGGGAATTGTTAAAGTCAATGAACCCAAATGTC
AACAATTTAAAGACAGTTTATCGAATTATATTTTGCCGAATCTTTCTGAA
TATTTTTCACACATTTCCCCAGAGATCTTAAACACATTTTTTTCTTTTAT
AAGCATAACGTTTATAAGCATATGCAGAGTCAGTTTTTGGTACCTAGACA
ATGGCTCTATTATTTGAGAACAATAGAATGCTAAGCATAATGCGAGCCTG
ATATAGGGACATACACTTGCTTATAGAAAAACATGTATTTTCATATGAGT
TTAAAAAAAACTGTTTAATGGACTCTCACTAATTCGAGCTCCCGTTCGTA
AATCTTCTTAATTTGCACCTCTTTACAGACTACTATTCAAGTTCGAATTA
GTGGGAATTTGTTTTGGAGAATAGAAAATCTATGTTTTGAGTATTATAAT
GTAAGATATTTTATGGCCGATTTTTACAACTCCAATCAAAAATTTTCCTA
CTCTCGGGTACCTAATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038509-exon-sc0001871-1575043694:31398..31517 | TCONS_00038509-exon-sc0001871-1575043694:31398..31517 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1575043694:28580..28628 | TCONS_00038509-exon-sc0001871-1575043694:28580..28628 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1575043694:24898..27897 | TCONS_00038509-exon-sc0001871-1575043694:24898..27897 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1510915933:31398..31517 | TCONS_00038509-exon-sc0001871-1510915933:31398..31517 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1510915933:28580..28628 | TCONS_00038509-exon-sc0001871-1510915933:28580..28628 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1510915933:24898..27897 | TCONS_00038509-exon-sc0001871-1510915933:24898..27897 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1491911889:31398..31517 | TCONS_00038509-exon-sc0001871-1491911889:31398..31517 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1491911889:28580..28628 | TCONS_00038509-exon-sc0001871-1491911889:28580..28628 | Clytia hemisphaerica | exon |
| TCONS_00038509-exon-sc0001871-1491911889:24898..27897 | TCONS_00038509-exon-sc0001871-1491911889:24898..27897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001871 | supercontig | sc0001871:24898..31517 - |
Blast
The following BLAST results are available for this feature:
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