TCONS_00038508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038508
Unique NameTCONS_00038508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038508 ID=TCONS_00038508|Name=TCONS_00038508|organism=Clytia hemisphaerica|type=transcript|length=976bp
TTGACCGAAAGAGTTCGATTTTGCAACAAATTCTTTCAATGCTTTTTGTG
TTGGCAGCTGCCACACAAGATTCGAAAGCTGGTTGTGGTTGGAGAGAAAA
ATAGCGGTAAAACGTCATGGTCAAAAGTGTTCTTTGGTTTGATGGCCAAA
GAAAAAATTGCCGTTCTTTCAAAGGAGGAGCATTTTGGAGCATCAATGAT
TCAAGACGACACTGAGCTTCTTTGGGTAGATGAATGGAAAAAAGAGATGT
TATCGGAAGACACTTTGAAAACCATGATGCAGGGTGGGTTCTTTTGCCAA
TCTGTCAAACACAAAAACCCAAAAATGCAGAACATGCAGGCAGGAGTGTA
CATAACCTGCAACGAAGTACCAGACTACGGCAACgaacaagaaaatgtcc
aaCTGCGCCTCTACATTTGTCgaacaaaaaaacttaaaagaacGTGTCTC
GATGCACCGAGGTGGATCCAAGAAAATGCCATGCAGTGTCTTTTATGGCT
GGCACTGTTTATTAATCAAAACATCGAACATGTTGAGCCGGAAGAAAGGT
TTTATGAACGCCCCAAGGACGTCAGTGCTAATGCAAAAGTGACAAAGAAT
GTCCCCGATCATATTGTCAAACAAATACAAACTGGCACCCTTTTCAATCC
GCAAATACCCGCAGTCCCAGCTCCAAAAGACGGTGATAATGCAGATCCAC
ATGGCAAAAGGAAAATGAAGCGCAAGCTTCCTTCGGACGATGGTCAACAG
CCGGGACCTTCGACGGCAAAGCAAGCCTTGTTAATTGAACCTGATAAAGT
TGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATTACAAGATGATG
ATGATACTGACGATGAACAATCCAAAGCTGtaccagagatttgggaaaag
aggataagaaacgccgctgccgctcgctgttttcctattctttccctttg
aattcggcaccctttgaagaagcaag
Run BLAST on NCBI

protein sequence of TCONS_00038508-protein

>TCONS_00038508-protein ID=TCONS_00038508-protein|Name=TCONS_00038508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
LTERVRFCNKFFQCFLCWQLPHKIRKLVVVGEKNSGKTSWSKVFFGLMAK
EKIAVLSKEEHFGASMIQDDTELLWVDEWKKEMLSEDTLKTMMQGGFFCQ
SVKHKNPKMQNMQAGVYITCNEVPDYGNEQENVQLRLYICRTKKLKRTCL
DAPRWIQENAMQCLLWLALFINQNIEHVEPEERFYERPKDVSANAKVTKN
VPDHIVKQIQTGTLFNPQIPAVPAPKDGDNADPHGKRKMKRKLPSDDGQQ
PGPSTAKQALLIEPDKVEDNQVEAKIVIELQDDDDTDDEQSKAVPEIWEK
RIRNAAAARCFPILSL
Run BLAST on NCBI

transcript from alignment at sc0001871:12634..13929-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038508 ID=TCONS_00038508|Name=TCONS_00038508|organism=Clytia hemisphaerica|type=transcript|length=1296bp|location=Sequence derived from alignment at sc0001871:12634..13929- (Clytia hemisphaerica)
TTGACCGAAAGAGTTCGATTTTGCAACAAATTCTTTCAATGCTTTTTGTG
TTGGCAGCTGCCACACAAGATTCGAAAGCTGGTTGTGGTTGGAGAGAAAA
ATAGCGGTAAAACGTCATGGTCAAAAGTGTTCTTTGGTTTGATGGCCAAA
GAAAAAATTGCCGTTCTTTCAAAGGAGGAGCATTTTGGAGCATCAATGAT
TCAAGACGACACTGAGCTTCTTTGGGTAGATGAATGGAAAAAAGAGATGT
TATCGGAAGACACTTTGAAAACCATGATGCAGGGTGGGTTCTTTTGCCAA
TCTGTCAAACACAAAAACCCAAAAATGCAGAACATGCAGGCAGGAGTGTA
CATAACCTGCAACGAAGTACCAGACTACGGCAACGAACAAGAAAATGTCC
AACTGCGCCTCTACATTTGTCGAACAAAAAAACTTAAAAGAACGTGTCTC
GATGCACCGAGGTGGATCCAAGAAAATGCCATGCAGTGTCTTTTATGGCT
GGCACTGTTTATTAATCAAAACATCGAACATGTTGAGCCGGAAGAAAGGT
TTTATGAACGCCCCAAGGACGTCAGTGCTAATGCAAAAGTGACAAAGAAT
GTCCCCGATCATATTGTCAAACAAATACAAACTGGCACCCTTTTCAATCC
GCAAATACCCGCAGTCCCAGCTCCAAAAGACGGTGATAATGCAGGTGAGC
TCTTTTTCATTATATATACTTTGTTTTTAATGCTGCAAGCAGTCAAGGTT
TTCAAAAAAAAACTTGAAGCAACATGAATTCTTTTCGTTCTTTTAAAGAC
CAAACGGGCTTGGAATACAATTGTGTTTCTTTTGTATTAATAAATCTGTC
ATTATGAAATTATATTTATCATCTCAGATCCACATGGCAAAAGGAAAATG
AAGCGCAAGCTTCCTTCGGACGATGGTCAACAGCCGGGACCTTCGACGGC
AAAGCAAGCCTTGTTAATTGAACCTGGTAAGATATTATTGCTAATTTGAT
TACCATGTTTAGACATGCTTACTCATTTATTTTCTTGTTGCATGCCTTTA
AAACAGAGTACATCATCACAAGAGCAGAAGTAATGAAATTTTGATTATGT
TTATATCTTACAGATAAAGTTGAAGACAATCAAGTAGAGGCGAAGATTGT
CATCGAATTACAAGATGATGATGATACTGACGATGAACAATCCAAAGCTG
TACCAGAGATTTGGGAAAAGAGGATAAGAAACGCCGCTGCCGCTCGCTGT
TTTCCTATTCTTTCCCTTTGAATTCGGCACCCTTTGAAGAAGCAAG

Coding sequence (CDS) from alignment at sc0001871:12634..13929-

>TCONS_00038508 ID=TCONS_00038508|Name=TCONS_00038508|organism=Clytia hemisphaerica|type=CDS|length=2853bp|location=Sequence derived from alignment at sc0001871:12634..13929- (Clytia hemisphaerica)
ATAAAGTTGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATTACAA
GATGATGATGATACTGACGATGAACAATCCAAAGCTGTACCAGAGATTTG
GGAAAAGAGGATAAGAAACGCCGCTGCCGCTCGCTGTTTTCCTATTCTTT
CCCTTTGAATCCACATGGCAAAAGGAAAATGAAGCGCAAGCTTCCTTCGG
ACGATGGTCAACAGCCGGGACCTTCGACGGCAAAGCAAGCCTTGTTAATT
GAACCTGTTGACCGAAAGAGTTCGATTTTGCAACAAATTCTTTCAATGCT
TTTTGTGTTGGCAGCTGCCACACAAGATTCGAAAGCTGGTTGTGGTTGGA
GAGAAAAATAGCGGTAAAACGTCATGGTCAAAAGTGTTCTTTGGTTTGAT
GGCCAAAGAAAAAATTGCCGTTCTTTCAAAGGAGGAGCATTTTGGAGCAT
CAATGATTCAAGACGACACTGAGCTTCTTTGGGTAGATGAATGGAAAAAA
GAGATGTTATCGGAAGACACTTTGAAAACCATGATGCAGGGTGGGTTCTT
TTGCCAATCTGTCAAACACAAAAACCCAAAAATGCAGAACATGCAGGCAG
GAGTGTACATAACCTGCAACGAAGTACCAGACTACGGCAACGAACAAGAA
AATGTCCAACTGCGCCTCTACATTTGTCGAACAAAAAAACTTAAAAGAAC
GTGTCTCGATGCACCGAGGTGGATCCAAGAAAATGCCATGCAGTGTCTTT
TATGGCTGGCACTGTTTATTAATCAAAACATCGAACATGTTGAGCCGGAA
GAAAGGTTTTATGAACGCCCCAAGGACGTCAGTGCTAATGCAAAAGTGAC
AAAGAATGTCCCCGATCATATTGTCAAACAAATACAAACTGGCACCCTTT
TCAATCCGCAAATACCCGCAGTCCCAGCTCCAAAAGACGGTGATAATGCA
GATAAAGTTGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATTACA
AGATGATGATGATACTGACGATGAACAATCCAAAGCTGTACCAGAGATTT
GGGAAAAGAGGATAAGAAACGCCGCTGCCGCTCGCTGTTTTCCTATTCTT
TCCCTTTGAATCCACATGGCAAAAGGAAAATGAAGCGCAAGCTTCCTTCG
GACGATGGTCAACAGCCGGGACCTTCGACGGCAAAGCAAGCCTTGTTAAT
TGAACCTGTTGACCGAAAGAGTTCGATTTTGCAACAAATTCTTTCAATGC
TTTTTGTGTTGGCAGCTGCCACACAAGATTCGAAAGCTGGTTGTGGTTGG
AGAGAAAAATAGCGGTAAAACGTCATGGTCAAAAGTGTTCTTTGGTTTGA
TGGCCAAAGAAAAAATTGCCGTTCTTTCAAAGGAGGAGCATTTTGGAGCA
TCAATGATTCAAGACGACACTGAGCTTCTTTGGGTAGATGAATGGAAAAA
AGAGATGTTATCGGAAGACACTTTGAAAACCATGATGCAGGGTGGGTTCT
TTTGCCAATCTGTCAAACACAAAAACCCAAAAATGCAGAACATGCAGGCA
GGAGTGTACATAACCTGCAACGAAGTACCAGACTACGGCAACGAACAAGA
AAATGTCCAACTGCGCCTCTACATTTGTCGAACAAAAAAACTTAAAAGAA
CGTGTCTCGATGCACCGAGGTGGATCCAAGAAAATGCCATGCAGTGTCTT
TTATGGCTGGCACTGTTTATTAATCAAAACATCGAACATGTTGAGCCGGA
AGAAAGGTTTTATGAACGCCCCAAGGACGTCAGTGCTAATGCAAAAGTGA
CAAAGAATGTCCCCGATCATATTGTCAAACAAATACAAACTGGCACCCTT
TTCAATCCGCAAATACCCGCAGTCCCAGCTCCAAAAGACGGTGATAATGC
AGATAAAGTTGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATTAC
AAGATGATGATGATACTGACGATGAACAATCCAAAGCTGTACCAGAGATT
TGGGAAAAGAGGATAAGAAACGCCGCTGCCGCTCGCTGTTTTCCTATTCT
TTCCCTTTGAATCCACATGGCAAAAGGAAAATGAAGCGCAAGCTTCCTTC
GGACGATGGTCAACAGCCGGGACCTTCGACGGCAAAGCAAGCCTTGTTAA
TTGAACCTGTTGACCGAAAGAGTTCGATTTTGCAACAAATTCTTTCAATG
CTTTTTGTGTTGGCAGCTGCCACACAAGATTCGAAAGCTGGTTGTGGTTG
GAGAGAAAAATAGCGGTAAAACGTCATGGTCAAAAGTGTTCTTTGGTTTG
ATGGCCAAAGAAAAAATTGCCGTTCTTTCAAAGGAGGAGCATTTTGGAGC
ATCAATGATTCAAGACGACACTGAGCTTCTTTGGGTAGATGAATGGAAAA
AAGAGATGTTATCGGAAGACACTTTGAAAACCATGATGCAGGGTGGGTTC
TTTTGCCAATCTGTCAAACACAAAAACCCAAAAATGCAGAACATGCAGGC
AGGAGTGTACATAACCTGCAACGAAGTACCAGACTACGGCAACGAACAAG
AAAATGTCCAACTGCGCCTCTACATTTGTCGAACAAAAAAACTTAAAAGA
ACGTGTCTCGATGCACCGAGGTGGATCCAAGAAAATGCCATGCAGTGTCT
TTTATGGCTGGCACTGTTTATTAATCAAAACATCGAACATGTTGAGCCGG
AAGAAAGGTTTTATGAACGCCCCAAGGACGTCAGTGCTAATGCAAAAGTG
ACAAAGAATGTCCCCGATCATATTGTCAAACAAATACAAACTGGCACCCT
TTTCAATCCGCAAATACCCGCAGTCCCAGCTCCAAAAGACGGTGATAATG
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023092XLOC_023092Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038508-proteinTCONS_00038508-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038508-exon-sc0001871-1575043694:13236..13929TCONS_00038508-exon-sc0001871-1575043694:13236..13929Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1575043694:12954..13052TCONS_00038508-exon-sc0001871-1575043694:12954..13052Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1575043694:12634..12816TCONS_00038508-exon-sc0001871-1575043694:12634..12816Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1510915933:13236..13929TCONS_00038508-exon-sc0001871-1510915933:13236..13929Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1510915933:12954..13052TCONS_00038508-exon-sc0001871-1510915933:12954..13052Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1510915933:12634..12816TCONS_00038508-exon-sc0001871-1510915933:12634..12816Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1491911889:13236..13929TCONS_00038508-exon-sc0001871-1491911889:13236..13929Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1491911889:12954..13052TCONS_00038508-exon-sc0001871-1491911889:12954..13052Clytia hemisphaericaexon
TCONS_00038508-exon-sc0001871-1491911889:12634..12816TCONS_00038508-exon-sc0001871-1491911889:12634..12816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001871supercontigsc0001871:12634..13929 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47301	1.56682	0.263392	0.0711337	2.09897	1.77868	2.89153	2.30928	2.16466	3.06635	2.97777	3.96898	4.56134	4.39216	0.253863	0.14589	0	0.149952	0.0499504	0.0519024	0.0454077	0.0672103	0.716957	0.707975	4.70848	5.59907	0.163991	0	0.634467	0.640691
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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