TCONS_00038507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038507
Unique NameTCONS_00038507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038507 ID=TCONS_00038507|Name=TCONS_00038507|organism=Clytia hemisphaerica|type=transcript|length=364bp
GTTGTCTCTAATAACACTAGGTGTTAGTGGTAGTGATCGGTTCCTTGGCG
TTGGAGGAAGAGATCTTGATCGAGGTCGAGTGGAGGATATCGAGGTGTCT
GATGAGAGGTCAGTAATACTTTTGGTAGGTGAAGATACAGGTGTATGTTG
TGGGGAGTTTGCGACAAATGTGGTGTTGGTAGTTTTGCTTCTTTGATTGA
GTTGATGTTGACATGATTCACACTGGAATTGGCAGTGTTGGTTAAACTTG
TTTTGTGTGGAAAATTTATTGTATTTTCCTGACACNGTTGACATGATTCA
CACTGGAATTGGCAGTGTTGGTTAAACTTGTTTTGTGTGGAAAATTTATT
GTATTTTCCTGACA
Run BLAST on NCBI

protein sequence of TCONS_00038507-protein

>TCONS_00038507-protein ID=TCONS_00038507-protein|Name=TCONS_00038507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
SGKYNKFSTQNKFNQHCQFQCESCQXCQENTINFPHKTSLTNTANSSVNH
VNINSIKEAKLPTPHLSQTPHNIHLYLHLPKVLLTSHQTPRYPPLDLDQD
LFLQRQGTDHYH
Run BLAST on NCBI

transcript from alignment at sc0001869:40285..40648

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038507 ID=TCONS_00038507|Name=TCONS_00038507|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0001869:40285..40648 (Clytia hemisphaerica)
TGTCAGGAAAATACAATAAATTTTCCACACAAAACAAGTTTAACCAACAC
TGCCAATTCCAGTGTGAATCATGTCAACNGTGTCAGGAAAATACAATAAA
TTTTCCACACAAAACAAGTTTAACCAACACTGCCAATTCCAGTGTGAATC
ATGTCAACATCAACTCAATCAAAGAAGCAAAACTACCAACACCACATTTG
TCGCAAACTCCCCACAACATACACCTGTATCTTCACCTACCAAAAGTATT
ACTGACCTCTCATCAGACACCTCGATATCCTCCACTCGACCTCGATCAAG
ATCTCTTCCTCCAACGCCAAGGAACCGATCACTACCACTAACACCTAGTG
TTATTAGAGACAAC

Coding sequence (CDS) from alignment at sc0001869:40285..40648

>TCONS_00038507 ID=TCONS_00038507|Name=TCONS_00038507|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0001869:40285..40648 (Clytia hemisphaerica)
TCAGGAAAATACAATAAATTTTCCACACAAAACAAGTTTAACCAACACTG
CCAATTCCAGTGTGAATCATGTCAACNGTGTCAGGAAAATACAATAAATT
TTCCACACAAAACAAGTTTAACCAACACTGCCAATTCCAGTGTGAATCAT
GTCAACATCAACTCAATCAAAGAAGCAAAACTACCAACACCACATTTGTC
GCAAACTCCCCACAACATACACCTGTATCTTCACCTACCAAAAGTATTAC
TGACCTCTCATCAGACACCTCGATATCCTCCACTCGACCTCGATCAAGAT
CTCTTCCTCCAACGCCAAGGAACCGATCACTACCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023091XLOC_023091Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038507-proteinTCONS_00038507-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038507-exon-sc0001869-1491911889:40285..40648TCONS_00038507-exon-sc0001869-1491911889:40285..40648Clytia hemisphaericaexon
TCONS_00038507-exon-sc0001869-1510915933:40285..40648TCONS_00038507-exon-sc0001869-1510915933:40285..40648Clytia hemisphaericaexon
TCONS_00038507-exon-sc0001869-1575043694:40285..40648TCONS_00038507-exon-sc0001869-1575043694:40285..40648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001869supercontigsc0001869:40285..40648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50958	1.83709	2.47528	1.60801	0.555833	0.839239	0.75147	0.341918	0.803516	0	0	0.714784	0.533226	0.692976	0.758675	0	0.343652	0.991629	2.42936	3.6334	1.4131	1.12539	1.41615	0.444833	0	0	1.33787	1.81578	0.328279	1.20912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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