TCONS_00038506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038506
Unique NameTCONS_00038506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038506 ID=TCONS_00038506|Name=TCONS_00038506|organism=Clytia hemisphaerica|type=transcript|length=433bp
AGGTCCAAAGACTGCTGGTAGTTCAGCGTTAGACTCTCGTCTAACATTTC
GATGGCTGgctggcgtattggcggccgcccacgagCTTCATCGAGCCTAG
TGTaatctagactagagtctacttttggcttaactttgcattttgttgat
ttcaatGACGCTGAGTTGAGTAAAATAGACGAGaaggcactttcgatttc
aagcgcAACTTTTTGTCGTCTCCATGGAAACTTTGAATTTCTGCTGAAAA
GGGTCTGGATCGGTTGATGGATTTTGGTTGGCAAcaaataggccatttca
cactcgaaatgaatcatgggtaatcAGGACTGGTTGCGCTCTAGTAACGA
CTTccggttggctagacgcaaaaatctttaaattttttcaaaactttgga
ccaataataAGTCGTCATCAGCGCGCAGTggcc
Run BLAST on NCBI

protein sequence of TCONS_00038506-protein

>TCONS_00038506-protein ID=TCONS_00038506-protein|Name=TCONS_00038506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MIHFECEMAYLLPTKIHQPIQTLFSRNSKFPWRRQKVALEIESAFSSILL
NSASLKSTKCKVKPKVDSSLDYTRLDEARGRPPIRQPAIEMLDESLTLNY
QQSLD
Run BLAST on NCBI

transcript from alignment at sc0001868:23195..23627

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038506 ID=TCONS_00038506|Name=TCONS_00038506|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0001868:23195..23627 (Clytia hemisphaerica)
ggccACTGCGCGCTGATGACGACTtattattggtccaaagttttgaaaaa
atttaaagatttttgcgtctagccaaccggAAGTCGTTACTAGAGCGCAA
CCAGTCCTgattacccatgattcatttcgagtgtgaaatggcctatttgT
TGCCAACCAAAATCCATCAACCGATCCAGACCCTTTTCAGCAGAAATTCA
AAGTTTCCATGGAGACGACAAAAAGTTgcgcttgaaatcgaaagtgcctt
CTCGTCTATTTTACTCAACTCAGCGTCattgaaatcaacaaaatgcaaag
ttaagccaaaagtagactctagtctagattACACTAGGCTCGATGAAGct
cgtgggcggccgccaatacgccagcCAGCCATCGAAATGTTAGACGAGAG
TCTAACGCTGAACTACCAGCAGTCTTTGGACCT

Coding sequence (CDS) from alignment at sc0001868:23195..23627

>TCONS_00038506 ID=TCONS_00038506|Name=TCONS_00038506|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001868:23195..23627 (Clytia hemisphaerica)
atgattcatttcgagtgtgaaatggcctatttgTTGCCAACCAAAATCCA
TCAACCGATCCAGACCCTTTTCAGCAGAAATTCAAAGTTTCCATGGAGAC
GACAAAAAGTTgcgcttgaaatcgaaagtgccttCTCGTCTATTTTACTC
AACTCAGCGTCattgaaatcaacaaaatgcaaagttaagccaaaagtaga
ctctagtctagattACACTAGGCTCGATGAAGctcgtgggcggccgccaa
tacgccagcCAGCCATCGAAATGTTAGACGAGAGTCTAACGCTGAACTAC
CAGCAGTCTTTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023090XLOC_023090Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038506-proteinTCONS_00038506-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038506-exon-sc0001868-1491911889:23195..23627TCONS_00038506-exon-sc0001868-1491911889:23195..23627Clytia hemisphaericaexon
TCONS_00038506-exon-sc0001868-1510915933:23195..23627TCONS_00038506-exon-sc0001868-1510915933:23195..23627Clytia hemisphaericaexon
TCONS_00038506-exon-sc0001868-1575043694:23195..23627TCONS_00038506-exon-sc0001868-1575043694:23195..23627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001868supercontigsc0001868:23195..23627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.818619	2.19107	2.4902	1.9299	6.33036	7.84203	5.78816	8.00267	8.24334	8.80839	4.74156	3.99794	2.36367	3.06297	2.78798	2.25083	6.65825	2.55919	2.02037	4.91086	4.72142	4.81704	2.56666	2.32361	1.02029	1.21411	4.12631	4.86726	4.04323	1.79105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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