TCONS_00038504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038504
Unique NameTCONS_00038504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038504 ID=TCONS_00038504|Name=TCONS_00038504|organism=Clytia hemisphaerica|type=transcript|length=1429bp
GGATGTCCTGTCCTTGACTTGGCTGTTGGCTGCTTGGGTAAAGGTCCAAA
GACTGCTGGTAGTTCAgcttatttttatcatttgtgTTGTTTGTTCTCTC
TCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAgcttatttttatcatt
tgtgTTGTTTGTTCTCTCTCTGGCTGGTGGATTGATTCTTcagaccaatc
aaattttgttgcaACTTTTGTTTGGTTAGATTGCTACTGTATCCAATGAA
CAAGAATTTAAAATGGcatttgaaaatgatgattcATTCGATTTACTTTT
AAAAATCGGTCACCaaggtttatataccaccaaaatttgagaacaaaaat
gaatttttgaaaatgGTCTACCACAAAGAATTCTGGGAGCCAAGAATGGA
AGCTATACGGCAACTTCAACAAGGGATAAACATTCGAGGTTTATTCCCAA
TCATCAAAGAAAATTTAGATGAATTTTCAAAGTACTTCACATACAACAAG
AAACTTGATTATTTCTACTTTGTCGAACAATTGAAGCCTCAATTCGCACC
TGAAGGATCAAATAAATATATGAAAGAAGACACAGTCTACAAATTTTTCT
GCGATTATATCCAGAATATTAATTTCAGTGaaaattgtacCCATTCACTC
AGTGATGTTTGTCAGTTCATCACCGGGAGTATGAATATCCCTCCCATGGG
ATTCCAACCGAAAATAATCGTTTCGTTTGAACACTTTTGTAACGAATCAT
GCAATTGTTATCCAGAGTCGAGCACGTGCGGTTATGTTTTAAAGTTGCCC
GTTCACGTCAATAGCCTTGAAGAAATGACGGCTAAAATGGACGAAGCCAT
CATTAATGGACCCTTCATGTTTAGAGGCTAGAAACTgtttaaaaagtctt
ttttaaagtctccacACGCGATACTtctgtttatatttttcttctttttc
ttcttattttggATCTTCCATTCAGATCTTTTCATGTATCTAACATTATG
CGGGTCTATTTTCAATGGCATCAGAGacagaactttctattttattttga
aatactttttactgtttatatttttttactctCTTTTTGGTTCTTACTTT
GACTTCATGGGCATTTTTTGGGAGGATAAGGATATCAAAGgtttttagga
tgatttttgaACTGATGAAAAAGAGACCAGGTTCGCTCATACTCATAAAG
ATCTATAAGATTCCCGGAACGGTATTTCCAGCACGATATCGAACCAGCAC
GCGATTTgattttatattgaatttttataCCTTTTTCGAACCCACTGTAT
GGGCCAATGTTCGCAATTTGACGTCAAGCGAAATCAAGTTGCTGGGCCAA
GGTTGAGTTAGGGCCATATTACTATAGCG
Run BLAST on NCBI

protein sequence of TCONS_00038504-protein

>TCONS_00038504-protein ID=TCONS_00038504-protein|Name=TCONS_00038504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MVYHKEFWEPRMEAIRQLQQGINIRGLFPIIKENLDEFSKYFTYNKKLDY
FYFVEQLKPQFAPEGSNKYMKEDTVYKFFCDYIQNINFSENCTHSLSDVC
QFITGSMNIPPMGFQPKIIVSFEHFCNESCNCYPESSTCGYVLKLPVHVN
SLEEMTAKMDEAIINGPFMFRG
Run BLAST on NCBI

transcript from alignment at sc0001868:26336..36519-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038504 ID=TCONS_00038504|Name=TCONS_00038504|organism=Clytia hemisphaerica|type=transcript|length=10184bp|location=Sequence derived from alignment at sc0001868:26336..36519- (Clytia hemisphaerica)
GGATGTCCTGTCCTTGACTTGGCTGTTGGCTGCTTGGGTAAAGGTCCAAA
GACTGCTGGTAGTTCAGCTTATTTTTATCATTTGTGTTGTTTGTTCTCTC
TCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTATTTTTATCATT
TGTGTTGTTTGTTCTCTCTCTGGCTGGTGGATTGATTCTTCAGACCAATC
AAATTTTGTTGCAACTTTTGTTTGGTTAGGTATAGATATACAGTATTATG
CAATATGCCAAAAGTACAAGTACCTCTCGTGTTTGAACAGCAATTCAAAT
ATGCTGGTTATATCATGGGAATTTGTTTTTTACAAATGGGCCGATCACCT
TCGATACTAAGCGAAGAATGCTTTAAAGTCCTTTGTGACCTACCAGCTGA
CCCAAGACAAGAATTTCTTGAATCACCTTCAGTAAAACCAGTACAGTTTG
GAACATTTGGCGAGTTCCTGTACGCGGCCGCAATCAAAACAACACTCATT
AAAAAATGGCGTTCGTGTCTTTTCTCACTTTTTTTAGCCTAGACGATGTA
GCAAACAAAGTAAGTATAAGCACACTGTGCTTTTAATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTGCGCTGAGGTGGAGTGCGTGACGTAACTCG
CGCGGCAACTAACTCGCCTTCTGTTGGAAGATCATATTGGGTGTTTTGGC
GTTACCACCCTCGAAGCAGCAGGCGTCTTTGTCTTTTCGCATCTTTTTCC
ACCATTTTAGATGGCCTTAACAATAGATCCAAAAGGGCGCCATAATCTTA
GAATATAATTTGTTTTGGTCCCCGGCTTTGGGAAGTAGCAATGTTTTTGG
TTGTTTTCGATGGGAAATGGTAAGAAACTTAAGTTTACAAGTGTCATTTA
GTTTTTGCTGGCTTATAGTATGGCAGTATCCTGGATGGTTTCCCTAACTG
CAGTAAGTTGAAAAAAGTTTACTTTGAGGGAAGAAATGAAATTCCCACCA
AAATTTCTTCCCTCTGATTTTAGAGCACCATTCTTTTAAAATTAAAGTAC
ACGTCTACTATCAATTTTTTTCTCAAATTCAGTTGAGCTAGAATTTGGAG
CTAAACCTTAGCTCAGGTTAATTCCAAGTCGAATGAAGTACATCCCGCCA
CCGCACCGAGGCGGCTATGAAATAGTATATTTCGGCTGCCGGTTATTCTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTTATTCTTTCCTTCGCCTATATATATCCTACCGTCAAGCCCCTTTC
AGCGCAGTTCAGCTCAGTCTCAATTGATCACAACTTCAATCTTTCATCAT
CTGAACAACGACCACCACGACGAACAACGACCACCATTTCAGCCATTTTG
CCGCTATATCTGCTACACGTGTCAACAACCAGCGTTGAATCCAACGGCTC
GCCCAAACTTTACAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNTGCTAATGTTTTGAAATTAATCATTTTATAGTGTTGTG
TCAAATTTGATTGATCGATATTCGTTGACTACTATCGGAAGTGTCTATCC
TTTTGGGACAATAGGTTGAAACTTTATAATAAGGGATAAGAAGATAAGTT
TGACTGGCAGGTTCACTGCTCCAATTTGCAGCCAAATGTTTTGTGACTAA
ATGCTAAACAGGTTTTTTGGAAATACTTGATAAGTCATATTATTTTCGCT
ATATAGGAGTTGACGGAGAAAAGGGCTTCACAAAATGACTTAGTCATCCA
GTATCTTAAATGGAATCACAACCTAACTGTAATGGTATGGAGTACTTTGA
AATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGTA
GCTCAACAATGATTGTTGTTTCAACTTGATAGAGTCAGTGGCTAGACAAG
GACAGTAATGAATTTCAATAGATTTCTCGAGCATGGATACTTTGGAATAA
TCAAAGGACCAAGTTCAAGTCATTTATGAAAATATTTAGTTATATATAGT
TAATGGCTAACAGATGATATGTTTTGAACCGTTCGTAATTTCCAAGTTTA
GTTTGCAGCGTACATTCACTGCAAACCAAATCTTAATTAGGATGTCTTAT
TTCCGTTTCATGCCACATCTCTGCAAGAGACTTGAATCACATTGTACAGA
TCTCGAATCAACAGCTTAAATTCAGATCTTTTAAAGCTCTTTAAAAACTC
AAATTTAGTTCTTCAATTTTCCACATGATTGTATTTAGTTTCCTAGCTGA
TTTTCTTAATGCTGATGCTTTTTGAATATTTTCTCTCTTTCTATTTTGTT
GCCGTCATATTTTCCGAATTTTTGTTTTTATATCTTTGTTTATAACTCTT
CCTACTCCTTTTTTAAATTTGTACAGACTACAATTTCTAAGACCCATTTC
TTCGTAGAGATTCCTTTTCACAATAATATATGGAAATTCATGGATGGCAA
ACTTATATCTTGAAGGAAAGTCCATACCCTGCTCAAGCTCCTTCCTCTTG
AACACTATTTAAATACTCTAAGTTTTTGCATGGGTGGAGCCTCCGCTACC
CTCTCCGCATGTGTGTCTGACTCAATGATACACATTATGGGTAGACGGTC
TAGGGATTGCTATCTTAGGTATCTCAAATCTCTGACCAAGATATTTCTAA
GTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNGACCACTTTCAAAAACTTCTCATCTTGCC
TCCTTAGTCTGCCTTTTTTGTGTTTTTATTCCTAGGGCCTTATACTTTAA
TTGCATCTGAGACGTGGGAATTAACTGAGAATGTGTGTCAGTTATTCGTC
AGTCAATCAGTCTTTCTGTCCGCTCAAAACTTTGAGGCAGGCTGGAGACT
TCAAAAATAGACCAATTTGGTTGCACTCTTAATCCTTGTTTTTTTCTTTC
TTTTTAAATTTTATTTTTAAAGTGTGGTTTTTAGGTTTCATGTAGTCAAC
TTGAAAATTGGGCCGTGAGGGAATTGAAAGATATTGAAGTTGAGCCAGTG
CGGTTTGACAGTGATTTTATGTGAAAAAATTTTAGTTATCAATTCTTTAT
TTGTTATCCATTTAGATTGCTACTGTATCCAATGAACAAGAATTTAAAAT
GGCATTTGAAAATGATGATTCATTCGATTTACTTTTAAAAATCGGTCACC
AAGGTTTATATACCACCAAAATTTGAGAACAAAAATGAATTTTTGAAGTG
AGTTTAATTATAATTGGGTGATTGAAACTAGCATGACCAAGAGTAGGTTT
TCAATTCGGAAAAGTTAAAGTGGAAGAGGGCCTTAGAATCCAAGTCGAAT
TCAATTAGTCTCCCCTAAAGAGTTGTATTTTCACCGAAATTCACTCAAGA
TTTGTTTTTGGACAACTACTTCTATCCCCTCCACCTGGAAAAAGTAAATA
TGAAAATAATGAAATATGGAGACCTTTCATGCTTCTGCAGACTCCTGAAT
GAAACCCCAAAATATTTTAGGTCGTGTCCAGGCTCCTTCCAAATAACACA
ACACTGGTTTGAAGAATCTCCGATAATCTCGTTTACTATGGTCTTGGTTT
TTAAAAGCACGGAACCATTCCACCATTTCCTTTATCTGGTCTTCTACCTA
TTATGATACATAGCAATAATATTATATACATACAGTTGACTCTCTGTAAT
TCGATCTTCAAGGGATCGAATCGAAGAATTTGGGCTTCAAATTAGAAAAA
GAATCGATTTACAGAAACTATTATTTACTACTTTAGGCTTACAAACTTTC
GCGAACAGAAACTTTCGCGAGGACGAATATTTTTTCAAAGTGAGGTTTTG
AAGATGGGCACCGGAGGTTTTTTTCACGTTGGTGTAATGCAACATGTTCA
AGCTTTGTTATGTTTTCATCAGATGAAATTTGTTTTTTTCTTCAGAATGG
TCTACCACAAAGAATTCTGGGAGCCAAGAATGGAAGCTATACGGCAACTT
CAACAAGGGATAAACATTCGAGGTTTATTCCCAATCATCAAAGAAAATTT
AGATGAATTTTCAAAGTACTTCACATACAACAAGAAACTTGATTATTTCT
ACTTTGTCGAACAATTGAAGCCTCAATTCGCACCTGAAGGATCAAATAAA
TATATGAAAGAAGACACAGTCTACAAATTTTTCTGCGATTATATCCAGAA
TATTAATTTCAGTGGTAAGATATTTACTTTTTCTGTGGAATTAAGGAAAA
GGCTTTTCTTTCTTTTTTCGATTTTAATTATTGTGCTCGTTAAAAAGATA
TTTGTGAGTAGATCATTGTCACATAAAAACTTTCTGAAAGAGATTTGAAA
ATGAAAAATGAAGAAGAAAAAACAACTTCTGATAAAATTGTTGTATATTA
ATCATTTTTCAATCAGTAAATCTTCAATCTTAGAACGTGACCACTGTGAA
AAACTTCATGTACAAGTAATTATGTTATCGACAAAAATGGCAGATTTTGG
GGCTTTGGGGGCAATTTCTGGGGTGAACCCCAGTGAACCAAAATTGACAA
ATAACCCCATTCTCGTCATCTACTCCTTCAATGAACCAGTTTAAATTTAT
TTTTGAAGTCTTTTATCATGGTTTAAAGGTTTTGTACTGAAAAATGACGC
ATTAGGAAATAAGCCCAAAAAGGGTTCAAAATTGCTCCGATTTTTTGCGC
TTTTTTTCTGGTGATTCTTGAGATCTTAAGGGAACTGTGTGCCAAATTTC
AGCCTCACAGTATTTTTTAGAGGTAAAAGAATATTCTAGAAACAAATGAA
ACAAACCAGACTGTGATTTCTTTCCCTTTTTTTAGAAAATTGTACCCATT
CACTCAGTGATGTTTGTCAGTTCATCACCGGGAGTATGAATATCCCTCCC
ATGGGATTCCAACCGAAAATAATCGTTTCGTTTGAACACTTTTGTAACGA
ATCATGCAATTGTTATCCAGAGTCGAGCACGTGCGGTTATGTTTTAAAGT
TGCCCGTTCACGTCAATAGCCTTGAAGAAATGACGGCTAAAATGGACGAA
GCCATCATTAATGGACCCTTCATGTTTAGAGGCTAGAAACTGTTTAAAAA
GTCTTTTTTAAAGTCTCCACACGCGATACTTCTGTTTATATTTTTCTTCT
TTTTCTTCTTATTTTGGATCTTCCATTCAGATCTTTTCATGTATCTAACA
TTATGCGGGTCTATTTTCAATGGCATCAGAGACAGAACTTTCTATTTTAT
TTTGAAATACTTTTTACTGTTTATATTTTTTTACTCTCTTTTTGGTTCTT
ACTTTGACTTCATGGGCATTTTTTGGGAGGATAAGGATATCAAAGGTTTT
TAGGATGATTTTTGAACTGATGAAAAAGAGACCAGGTTCGCTCATACTCA
TAAAGATCTATAAGATTCCCGGAACGGTATTTCCAGCACGATATCGAACC
AGCACGCGATTTGATTTTATATTGAATTTTTATACCTTTTTCGAACCCAC
TGTATGGGCCAATGTTCGCAATTTGACGTCAAGCGAAATCAAGTTGCTGG
GCCAAGGTTGAGTTAGGGCCATATTACTATAGCG

Coding sequence (CDS) from alignment at sc0001868:26336..36519-

>TCONS_00038504 ID=TCONS_00038504|Name=TCONS_00038504|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0001868:26336..36519- (Clytia hemisphaerica)
AAAATTGTACCCATTCACTCAGTGATGTTTGTCAGTTCATCACCGGGAGT
ATGAATATCCCTCCCATGGGATTCCAACCGAAAATAATCGTTTCGTTTGA
ACACTTTTGTAACGAATCATGCAATTGTTATCCAGAGTCGAGCACGTGCG
GTTATGTTTTAAAGTTGCCCGTTCACGTCAATAGCCTTGAAGAAATGACG
GCTAAAATGGACGAAGCCATCATTAATGGACCCTTCATGTTTAGAGGCTA
GATGGTCTACCACAAAGAATTCTGGGAGCCAAGAATGGAAGCTATACGGC
AACTTCAACAAGGGATAAACATTCGAGGTTTATTCCCAATCATCAAAGAA
AATTTAGATGAATTTTCAAAGTACTTCACATACAACAAGAAACTTGATTA
TTTCTACTTTGTCGAACAATTGAAGCCTCAATTCGCACCTGAAGGATCAA
ATAAATATATGAAAGAAGACACAGTCTACAAATTTTTCTGCGATTATATC
CAGAATATTAATTTCAGTGAAAATTGTACCCATTCACTCAGTGATGTTTG
TCAGTTCATCACCGGGAGTATGAATATCCCTCCCATGGGATTCCAACCGA
AAATAATCGTTTCGTTTGAACACTTTTGTAACGAATCATGCAATTGTTAT
CCAGAGTCGAGCACGTGCGGTTATGTTTTAAAGTTGCCCGTTCACGTCAA
TAGCCTTGAAGAAATGACGGCTAAAATGGACGAAGCCATCATTAATGGAC
CCTTCATGTTTAGAGGCTAGATGGTCTACCACAAAGAATTCTGGGAGCCA
AGAATGGAAGCTATACGGCAACTTCAACAAGGGATAAACATTCGAGGTTT
ATTCCCAATCATCAAAGAAAATTTAGATGAATTTTCAAAGTACTTCACAT
ACAACAAGAAACTTGATTATTTCTACTTTGTCGAACAATTGAAGCCTCAA
TTCGCACCTGAAGGATCAAATAAATATATGAAAGAAGACACAGTCTACAA
ATTTTTCTGCGATTATATCCAGAATATTAATTTCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023088XLOC_023088Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038504-proteinTCONS_00038504-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038504-exon-sc0001868-1575043694:36241..36519TCONS_00038504-exon-sc0001868-1575043694:36241..36519Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1575043694:28673..28804TCONS_00038504-exon-sc0001868-1575043694:28673..28804Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1575043694:27706..27974TCONS_00038504-exon-sc0001868-1575043694:27706..27974Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1575043694:26336..27084TCONS_00038504-exon-sc0001868-1575043694:26336..27084Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1510915933:36241..36519TCONS_00038504-exon-sc0001868-1510915933:36241..36519Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1510915933:28673..28804TCONS_00038504-exon-sc0001868-1510915933:28673..28804Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1510915933:27706..27974TCONS_00038504-exon-sc0001868-1510915933:27706..27974Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1510915933:26336..27084TCONS_00038504-exon-sc0001868-1510915933:26336..27084Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1491911889:36241..36519TCONS_00038504-exon-sc0001868-1491911889:36241..36519Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1491911889:28673..28804TCONS_00038504-exon-sc0001868-1491911889:28673..28804Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1491911889:27706..27974TCONS_00038504-exon-sc0001868-1491911889:27706..27974Clytia hemisphaericaexon
TCONS_00038504-exon-sc0001868-1491911889:26336..27084TCONS_00038504-exon-sc0001868-1491911889:26336..27084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001868supercontigsc0001868:26336..36519 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376336	0.579237	0.230482	0.54762	6.34577	2.56435	4.41708	3.16592	2.09861	2.05232	1.90373	1.84618	1.44022	2.07184	1.5901	1.22451	1.23476	0.938568	2.57587	1.61775	2.35623	2.30927	0.461471	1.26686	1.40119	1.27524	1.31895	0.764285	0.417704	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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