TCONS_00038502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038502
Unique NameTCONS_00038502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038502 ID=TCONS_00038502|Name=TCONS_00038502|organism=Clytia hemisphaerica|type=transcript|length=1260bp
GCGAAGAATGCTTTAAAGTCCTTTGTGACCTACCAGCTGACCCAAGACAA
GAATTTCTTGAATCACCTTCAGTAAAACCAATTGCTACTGTATCCAATGA
ACAAGAATTTAAAATGGcatttgaaaatgatgattcATTCGATTTACTTT
TAAAAATCGGTCACCaaggtttatataccaccaaaatttgagaacaaaaa
tgaatttttgaaaatgGTCTACCACAAAGAATTCTGGGAGCCAAGAATGG
AAGCTATACGGCAACTTCAACAAGGGATAAACATTCGAGGTTTATTCCCA
ATCATCAAAGAAAATTTAGATGAATTTTCAAAGTACTTCACATACAACAA
GAAACTTGATTATTTCTACTTTGTCGAACAATTGAAGCCTCAATTCGCAC
CTGAAGGATCAAATAAATATATGAAAGAAGACACAGTCTACAAATTTTTC
TGCGATTATATCCAGAATATTAATTTCAGTGaaaattgtacCCATTCACT
CAGTGATGTTTGTCAGTTCATCACCGGGAGTATGAATATCCCTCCCATGG
GATTCCAACCGAAAATAATCGTTTCGTTTGAACACTTTTGTAACGAATCA
TGCAATTGTTATCCAGAGTCGAGCACGTGCGGTTATGTTTTAAAGTTGCC
CGTTCACGTCAATAGCCTTGAAGAAATGACGGCTAAAATGGACGAAGCCA
TCATTAATGGACCCTTCATGTTTAGAGGCTAGAAACTGTTTAAAAAGcct
tttttaaagtctccacACGCGATACTtctgtttatatttttcttcttttt
gttcttattttggatCTTCCATTCAGATCTTTTCATGTATCTAACATTAT
GCGGGTCTATTTTCAATGGCATCAGAGacagaactttttattttattttg
aaatactttttactgtatatatttttttactctCTTTTTGGTTCTTACTT
TGACTTCATGGGCTTTTTTTGGGAGGATAAGGATATCAAAGgtttttagg
atgatttttgaACTGATGAGACCAGGTTCGCTCATACTCATAAAGATCTA
TAAGATTCCCGGAACGGTATTTCCAGCACGATATCGAACCAGCACGCGAT
TTTTACAGTTACTGTAAGGTACAACGTAAAAACCAAAACTCTTATTGTTT
TTAGTATTCATTTGGGGCTGTTGTGCGCAAATTTGTTATactttttgcgc
aattttaTAATGATCCTTGCGGCGCAAATTTGTAATGTTTAAGCTACGCA
AAGATGTGAT
Run BLAST on NCBI

transcript from alignment at sc0001868:24818..36109-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038502 ID=TCONS_00038502|Name=TCONS_00038502|organism=Clytia hemisphaerica|type=transcript|length=11292bp|location=Sequence derived from alignment at sc0001868:24818..36109- (Clytia hemisphaerica)
GCGAAGAATGCTTTAAAGTCCTTTGTGACCTACCAGCTGACCCAAGACAA
GAATTTCTTGAATCACCTTCAGTAAAACCAGTACAGTTTGGAACATTTGG
CGAGTTCCTGTACGCGGCCGCAATCAAAACAACACTCATTAAAAAATGGC
GTTCGTGTCTTTTCTCACTTTTTTTAGCCTAGACGATGTAGCAAACAAAG
TAAGTATAAGCACACTGTGCTTTTAATNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNGTGCGCTGAGGTGGAGTGCGTGACGTAACTCGCGCGGCAACT
AACTCGCCTTCTGTTGGAAGATCATATTGGGTGTTTTGGCGTTACCACCC
TCGAAGCAGCAGGCGTCTTTGTCTTTTCGCATCTTTTTCCACCATTTTAG
ATGGCCTTAACAATAGATCCAAAAGGGCGCCATAATCTTAGAATATAATT
TGTTTTGGTCCCCGGCTTTGGGAAGTAGCAATGTTTTTGGTTGTTTTCGA
TGGGAAATGGTAAGAAACTTAAGTTTACAAGTGTCATTTAGTTTTTGCTG
GCTTATAGTATGGCAGTATCCTGGATGGTTTCCCTAACTGCAGTAAGTTG
AAAAAAGTTTACTTTGAGGGAAGAAATGAAATTCCCACCAAAATTTCTTC
CCTCTGATTTTAGAGCACCATTCTTTTAAAATTAAAGTACACGTCTACTA
TCAATTTTTTTCTCAAATTCAGTTGAGCTAGAATTTGGAGCTAAACCTTA
GCTCAGGTTAATTCCAAGTCGAATGAAGTACATCCCGCCACCGCACCGAG
GCGGCTATGAAATAGTATATTTCGGCTGCCGGTTATTCTNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTC
TTTCCTTCGCCTATATATATCCTACCGTCAAGCCCCTTTCAGCGCAGTTC
AGCTCAGTCTCAATTGATCACAACTTCAATCTTTCATCATCTGAACAACG
ACCACCACGACGAACAACGACCACCATTTCAGCCATTTTGCCGCTATATC
TGCTACACGTGTCAACAACCAGCGTTGAATCCAACGGCTCGCCCAAACTT
TACAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTGCTAATGTTTTGAAATTAATCATTTTATAGTGTTGTGTCAAATTTGA
TTGATCGATATTCGTTGACTACTATCGGAAGTGTCTATCCTTTTGGGACA
ATAGGTTGAAACTTTATAATAAGGGATAAGAAGATAAGTTTGACTGGCAG
GTTCACTGCTCCAATTTGCAGCCAAATGTTTTGTGACTAAATGCTAAACA
GGTTTTTTGGAAATACTTGATAAGTCATATTATTTTCGCTATATAGGAGT
TGACGGAGAAAAGGGCTTCACAAAATGACTTAGTCATCCAGTATCTTAAA
TGGAATCACAACCTAACTGTAATGGTATGGAGTACTTTGAAATTTTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGTAGCTCAACAAT
GATTGTTGTTTCAACTTGATAGAGTCAGTGGCTAGACAAGGACAGTAATG
AATTTCAATAGATTTCTCGAGCATGGATACTTTGGAATAATCAAAGGACC
AAGTTCAAGTCATTTATGAAAATATTTAGTTATATATAGTTAATGGCTAA
CAGATGATATGTTTTGAACCGTTCGTAATTTCCAAGTTTAGTTTGCAGCG
TACATTCACTGCAAACCAAATCTTAATTAGGATGTCTTATTTCCGTTTCA
TGCCACATCTCTGCAAGAGACTTGAATCACATTGTACAGATCTCGAATCA
ACAGCTTAAATTCAGATCTTTTAAAGCTCTTTAAAAACTCAAATTTAGTT
CTTCAATTTTCCACATGATTGTATTTAGTTTCCTAGCTGATTTTCTTAAT
GCTGATGCTTTTTGAATATTTTCTCTCTTTCTATTTTGTTGCCGTCATAT
TTTCCGAATTTTTGTTTTTATATCTTTGTTTATAACTCTTCCTACTCCTT
TTTTAAATTTGTACAGACTACAATTTCTAAGACCCATTTCTTCGTAGAGA
TTCCTTTTCACAATAATATATGGAAATTCATGGATGGCAAACTTATATCT
TGAAGGAAAGTCCATACCCTGCTCAAGCTCCTTCCTCTTGAACACTATTT
AAATACTCTAAGTTTTTGCATGGGTGGAGCCTCCGCTACCCTCTCCGCAT
GTGTGTCTGACTCAATGATACACATTATGGGTAGACGGTCTAGGGATTGC
TATCTTAGGTATCTCAAATCTCTGACCAAGATATTTCTAAGTTTANNNNN
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NNNNNNNNNNNGACCACTTTCAAAAACTTCTCATCTTGCCTCCTTAGTCT
GCCTTTTTTGTGTTTTTATTCCTAGGGCCTTATACTTTAATTGCATCTGA
GACGTGGGAATTAACTGAGAATGTGTGTCAGTTATTCGTCAGTCAATCAG
TCTTTCTGTCCGCTCAAAACTTTGAGGCAGGCTGGAGACTTCAAAAATAG
ACCAATTTGGTTGCACTCTTAATCCTTGTTTTTTTCTTTCTTTTTAAATT
TTATTTTTAAAGTGTGGTTTTTAGGTTTCATGTAGTCAACTTGAAAATTG
GGCCGTGAGGGAATTGAAAGATATTGAAGTTGAGCCAGTGCGGTTTGACA
GTGATTTTATGTGAAAAAATTTTAGTTATCAATTCTTTATTTGTTATCCA
TTTAGATTGCTACTGTATCCAATGAACAAGAATTTAAAATGGCATTTGAA
AATGATGATTCATTCGATTTACTTTTAAAAATCGGTCACCAAGGTTTATA
TACCACCAAAATTTGAGAACAAAAATGAATTTTTGAAGTGAGTTTAATTA
TAATTGGGTGATTGAAACTAGCATGACCAAGAGTAGGTTTTCAATTCGGA
AAAGTTAAAGTGGAAGAGGGCCTTAGAATCCAAGTCGAATTCAATTAGTC
TCCCCTAAAGAGTTGTATTTTCACCGAAATTCACTCAAGATTTGTTTTTG
GACAACTACTTCTATCCCCTCCACCTGGAAAAAGTAAATATGAAAATAAT
GAAATATGGAGACCTTTCATGCTTCTGCAGACTCCTGAATGAAACCCCAA
AATATTTTAGGTCGTGTCCAGGCTCCTTCCAAATAACACAACACTGGTTT
GAAGAATCTCCGATAATCTCGTTTACTATGGTCTTGGTTTTTAAAAGCAC
GGAACCATTCCACCATTTCCTTTATCTGGTCTTCTACCTATTATGATACA
TAGCAATAATATTATATACATACAGTTGACTCTCTGTAATTCGATCTTCA
AGGGATCGAATCGAAGAATTTGGGCTTCAAATTAGAAAAAGAATCGATTT
ACAGAAACTATTATTTACTACTTTAGGCTTACAAACTTTCGCGAACAGAA
ACTTTCGCGAGGACGAATATTTTTTCAAAGTGAGGTTTTGAAGATGGGCA
CCGGAGGTTTTTTTCACGTTGGTGTAATGCAACATGTTCAAGCTTTGTTA
TGTTTTCATCAGATGAAATTTGTTTTTTTCTTCAGAATGGTCTACCACAA
AGAATTCTGGGAGCCAAGAATGGAAGCTATACGGCAACTTCAACAAGGGA
TAAACATTCGAGGTTTATTCCCAATCATCAAAGAAAATTTAGATGAATTT
TCAAAGTACTTCACATACAACAAGAAACTTGATTATTTCTACTTTGTCGA
ACAATTGAAGCCTCAATTCGCACCTGAAGGATCAAATAAATATATGAAAG
AAGACACAGTCTACAAATTTTTCTGCGATTATATCCAGAATATTAATTTC
AGTGGTAAGATATTTACTTTTTCTGTGGAATTAAGGAAAAGGCTTTTCTT
TCTTTTTTCGATTTTAATTATTGTGCTCGTTAAAAAGATATTTGTGAGTA
GATCATTGTCACATAAAAACTTTCTGAAAGAGATTTGAAAATGAAAAATG
AAGAAGAAAAAACAACTTCTGATAAAATTGTTGTATATTAATCATTTTTC
AATCAGTAAATCTTCAATCTTAGAACGTGACCACTGTGAAAAACTTCATG
TACAAGTAATTATGTTATCGACAAAAATGGCAGATTTTGGGGCTTTGGGG
GCAATTTCTGGGGTGAACCCCAGTGAACCAAAATTGACAAATAACCCCAT
TCTCGTCATCTACTCCTTCAATGAACCAGTTTAAATTTATTTTTGAAGTC
TTTTATCATGGTTTAAAGGTTTTGTACTGAAAAATGACGCATTAGGAAAT
AAGCCCAAAAAGGGTTCAAAATTGCTCCGATTTTTTGCGCTTTTTTTCTG
GTGATTCTTGAGATCTTAAGGGAACTGTGTGCCAAATTTCAGCCTCACAG
TATTTTTTAGAGGTAAAAGAATATTCTAGAAACAAATGAAACAAACCAGA
CTGTGATTTCTTTCCCTTTTTTTAGAAAATTGTACCCATTCACTCAGTGA
TGTTTGTCAGTTCATCACCGGGAGTATGAATATCCCTCCCATGGGATTCC
AACCGAAAATAATCGTTTCGTTTGAACACTTTTGTAACGAATCATGCAAT
TGTTATCCAGAGTCGAGCACGTGCGGTTATGTTTTAAAGTTGCCCGTTCA
CGTCAATAGCCTTGAAGAAATGACGGCTAAAATGGACGAAGCCATCATTA
ATGGACCCTTCATGTTTAGAGGCTAGAAACTGTTTAAAAAGTCTTTTTTA
AAGTCTCCACACGCGATACTTCTGTTTATATTTTTCTTCTTTTTCTTCTT
ATTTTGGATCTTCCATTCAGATCTTTTCATGTATCTAACATTATGCGGGT
CTATTTTCAATGGCATCAGAGACAGAACTTTCTATTTTATTTTGAAATAC
TTTTTACTGTTTATATTTTTTTACTCTCTTTTTGGTTCTTACTTTGACTT
CATGGGCATTTTTTGGGAGGATAAGGATATCAAAGGTTTTTAGGATGATT
TTTGAACTGATGAAAAAGAGACCAGGTTCGCTCATACTCATAAAGATCTA
TAAGATTCCCGGAACGGTATTTCCAGCACGATATCGAACCAGCACGCGAT
TTGATTTTATATTGAATTTTTATACCTTTTTCGAACCCACTGTATGGGCC
AATGTTCGCAATTTGACGTCAAGCGAAATCAAGTTGCTGGGCCAAGGTTG
AGTTAGGGCCATATTACTATAGCGTGAGCGCAAATTTGTAATACTGCGCA
ATTTTATAATGATCCTTGCGGCGCAAATTTGTAATGTTTAAGCTACGCAA
AGATGTGATAGATACCTTTTTGCACAGTGATTATGAATATACGCAAGAAA
TGATATTAGTTTTCGTCAAACAAACACATTGAACACAAACAAATTATATT
ATTATAATTACAACAAGTTTTACAATTTTGCACAGATATTACAAATCCGC
GCACGACAAGGGCAAAGATGTAATATATTATGTATATTTAGAAAAAAGGA
AGCATTTACACAAAATACATATCTTCTGAGTTTAAATAAAAGATTGTCTC
AATCTCATGTTCGACTTGTGTTTTTTCCTGTCTGAAGTGGAGAAATTNTA
TGTTATCGACAAAAATGGCAGATTTTGGGGGTTTGGGGGCAATTTCTGGG
GTGAACCCCAGTGAACCAAAATTGACAAATAACCCCATTCTCGTCATCTA
CTCCTTCAATGAACCAGTTTAAATTTATTTTTGAAGTCTTTTATCATGGT
TTAAAGGTTTTGTACTGAAAAATGACGCATTAGGAAATAAGCCCAAAAAG
GGTTCAAAATTGCTCCGATTTTTTGCGCTTTTTTTCTGGTGATTCTTGAG
ATCTTAAGGGAACTGTGTGCCAAATTTCAGCCTCACAGTATTTTTTAGAG
GTAAAAGAATATTCTAGAAACAAATGAAACAAACCAGACTGTGATTTCTT
TCCCTTTTTTTAGAAAATTGTACCCATTCACTCAGTGATGTTTGTCAGTT
CATCACCGGGAGTATGAATATCCCTCCCATGGGATTCCAACCGAAAATAA
TCGTTTCGTTTGAACACTTTTGTAACGAATCATGCAATTGTTATCCAGAG
TCGAGCACGTGCGGTTATGTTTTAAAGTTGCCCGTTCACGTCAATAGCCT
TGAAGAAATGACGGCTAAAATGGACGAAGCCATCATTAATGGACCCTTCA
TGTTTAGAGGCTAGAAACTGTTTAAAAAGCCTTTTTTAAAGTCTCCACAC
GCGATACTTCTGTTTATATTTTTCTTCTTTTTGTTCTTATTTTGGATCTT
CCATTCAGATCTTTTCATGTATCTAACATTATGCGGGTCTATTTTCAATG
GCATCAGAGACAGAACTTTTTATTTTATTTTGAAATACTTTTTACTGTAT
ATATTTTTTTACTCTCTTTTTGGTTCTTACTTTGACTTCATGGGCTTTTT
TTGGGAGGATAAGGATATCAAAGGTTTTTAGGATGATTTTTGAACTGATG
AGACCAGGTTCGCTCATACTCATAAAGATCTATAAGATTCCCGGAACGGT
ATTTCCAGCACGATATCGAACCAGCACGCGATTTTTACAGTTACTGTAAG
GTACAACGTAAAAACCAAAACTCTTATTGTTTTTAGTATTCATTTGGGGC
TGTTGTGCGCAAATTTGTTATACTTTTTGCGCAATTTTATAATGATCCTT
GCGGCGCAAATTTGTAATGTTTAAGCTACGCAAAGATGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023088XLOC_023088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038502-exon-sc0001868-1575043694:36030..36109TCONS_00038502-exon-sc0001868-1575043694:36030..36109Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1575043694:28673..28804TCONS_00038502-exon-sc0001868-1575043694:28673..28804Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1575043694:27706..27974TCONS_00038502-exon-sc0001868-1575043694:27706..27974Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1575043694:24818..25596TCONS_00038502-exon-sc0001868-1575043694:24818..25596Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1510915933:36030..36109TCONS_00038502-exon-sc0001868-1510915933:36030..36109Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1510915933:28673..28804TCONS_00038502-exon-sc0001868-1510915933:28673..28804Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1510915933:27706..27974TCONS_00038502-exon-sc0001868-1510915933:27706..27974Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1510915933:24818..25596TCONS_00038502-exon-sc0001868-1510915933:24818..25596Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1491911889:36030..36109TCONS_00038502-exon-sc0001868-1491911889:36030..36109Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1491911889:28673..28804TCONS_00038502-exon-sc0001868-1491911889:28673..28804Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1491911889:27706..27974TCONS_00038502-exon-sc0001868-1491911889:27706..27974Clytia hemisphaericaexon
TCONS_00038502-exon-sc0001868-1491911889:24818..25596TCONS_00038502-exon-sc0001868-1491911889:24818..25596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001868supercontigsc0001868:24818..36109 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0129035	0	0	4.01436	2.75303	1.90935	1.97251	0	0	0	0.438989	0	0	0	0	0	0	0	0	0	0	0	0	0.548055	0.375948	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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