TCONS_00038500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038500
Unique NameTCONS_00038500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038500 ID=TCONS_00038500|Name=TCONS_00038500|organism=Clytia hemisphaerica|type=transcript|length=398bp
tgaaaaaatataagaatgGCCGAAAACCTAGAAAATCAAATGGGTCAAAT
GCTTGAGCAGATACGCTCAATGGATGAAGAAATTCAGTCGCTGAAATtac
aaAATGCCAAAAGTTCTGAGCAATCCGAGGAAGTGGAGGCCAAAGATATG
ACTGGAGAGAAATCAGCAGAagagaaatcgaaaaaaaaacagaacgCTCC
CGGACAAGCGATGGGCAGTAGCAGCCATCATGACATATACAAATGTATCG
AGCGCACATACCGAGAGTTCTTGCTGAGGGTGCAAGAACACTCCACGAAT
GACACATCAGACGCAGCCTTGGGCTTCTGGGTTTGCAACTTGGGGACACA
AATCCCAAGACAGCGGCCCACCGGAGGAAAACGAAAACGCAACTGATc
Run BLAST on NCBI

protein sequence of TCONS_00038500-protein

>TCONS_00038500-protein ID=TCONS_00038500-protein|Name=TCONS_00038500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MAENLENQMGQMLEQIRSMDEEIQSLKLQNAKSSEQSEEVEAKDMTGEKS
AEEKSKKKQNAPGQAMGSSSHHDIYKCIERTYREFLLRVQEHSTNDTSDA
ALGFWVCNLGTQIPRQRPTGGKRKRN
Run BLAST on NCBI

transcript from alignment at sc0001868:17546..20938+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038500 ID=TCONS_00038500|Name=TCONS_00038500|organism=Clytia hemisphaerica|type=transcript|length=3393bp|location=Sequence derived from alignment at sc0001868:17546..20938+ (Clytia hemisphaerica)
tgaaaaaatataagaatgGCCGAAAACCTAGAAAATCAAATGGGTCAAAT
GCTTGAGCAGATACGCTCAATGGATGAAGAAATTCAGTCGCTGAAATGTA
agttatgaaatttttcaatcaatcgCTCTGTTCTATTTCTCAGTCTTTTA
AATTTTGTCTTCTCCATCCTgtacatttttttcatatatttcttCTGAGA
ACTTGCTATAATTGGGAATTTGAAATTGAGCAATTCAAGGAGACTTGAAT
GTTTTAATGTTTTCccaatttaaaaataaacaaagtggGTTCTGGATTTG
TTTTGACTAAAAACCCAATCAATCATTGAAAAGTCTCAattgaaatttta
taaattgaattggacatttttcaatatttttggaaacAAGGCCAAAATCC
ATGAAATCCGCAAAAGCTAACCATTAAACATTAAATTAATAtgagattgt
tttttttttcagtacaaAATGCCAAAAGTTCTGAGCAATCCGAGGAAGTG
GAGGCCAAAGATATGACTGGAGAGAAATCAGCAGAagagaaatcgaaaaa
aaaacagaacggtaaattttttaattagaactttttatatttttagtcaa
acacttttatatatttctagaaAGCTAATGAGGAATCGAAatcgacattg
gcacttaaagggttaataacACTATACTATAGATACCCTTTTGTATCAtc
atttttgaccttttgataAGAAATATAATGTTCTGTAATAAAACTTTCCT
TAAAGTGAGGGNTTGACCTTTTGATAAGAAATATAATGTTCTGtaataaa
attttccttaaaatgagGGTTTTTTTCCCTCTATATTCAGCTCCCGGACA
AGCGATGGGCAGTAGCAGCCATCATGACATATACAAATGTATCGGTGAGT
GAATATTGATTTACACTGTCTGTAAAGAAGCGTTTATACATTACGTGCAT
ACATTATGTATAAGAATACTTGATATCTGATAGTTTTTTTATAGACAGTG
CACCGTAATGGTTCAATTAAAAGCCCCCCcctttttccagtttttttttt
aataaataccCCCTCTATTAAACGCCCCCAACCTGAGGGGGCATTTATTC
GAGACACACTAAAAACAtataaaacgtaaaaacaagTAGACTACTACATT
GCATTGTTTCAGTTTCACAGTATTTTTTTCgtataaaaacaaggaaattg
gCGATAGacacctttctttttaaattttagagtTACAGTgggaaactttt
tctttcttttttaaaattccTGATgtataaaggaaaaaaagaagagttct
acaaaaatgtaataaacgccccctggaataaacgccccctaaaaattcaa
aaagtttaataaaCGCCCAGGGCGTTTAATCGAAGCATTACGGTATACTT
TGTCTCTCAGTATGACCTGATAGTCCAGAAACAAAACAGCAAAGATCCCA
CCTTTTACTGGACCTTTGGAGCCACGTGGCTTTTATCTTCCTATGCCTTT
ATATAGATTACGTTTTAAGCAGGTTGAAAAGGGTTCCGTtacagggggag
gggggttgacgattttcaattttttttgaatcagGTGGGGGTGACCCTAT
ACAAGTGGGGGTGGAAATTTCCAGGTGTGGGTTGTGGAGTTTTGAGAGTA
TCTCTAGATCTTTCATATTTGTTATGAGAACTTAACttgagttgaaaaaa
aaatagaaaaaaaatattcaagtttGTTTTACAAGAAACTAATTAATAAA
TATGTAACTTAGAAGCTTCAttttgtaataatattttattttatttaata
tttaaaacGTTTCGGTCTTCATCCAAAGACCATCATCAGTTAAAAAACAA
GTAAGAAAGTTATGTGCACATATTTATATCAGAGTCGCTACAAGTAGAAT
AAAAAAGAATGTTAATGCGCTAATTACGTACATTAGAACATTAGAACATT
CTGGAAAGGATAATAATTCCCACGTTACCAAACACACGCAANCCAATGTT
GTTTATGAAGTTGAATGTAGTGAATGTGACGCGCGATATATTGGAGAAAG
TGGTAGACGATTAGAAGAAAGAACATTAGAACATTCTGGAAAGGATAATA
ATTCCCACGTTACCAAACACACGCAACAATATGGGCATGGTGAAATTACG
TTAGACAATGTAAAAATACTTAATAGTAATTACAAAAACTACTACAAAAG
AAAGGTTTCGGAAGCATTATATATTAGACAAAAGAAACCTGTATTAAATG
TGCAAGATATGTCTGTTCCCTTGAAACTTTTTAACTAATAGCATTTTAAT
TATTGTAACATATTTTAACACATTTATCgacaattttattacttttatta
tCCTACAATTACAAGTAGAATAAGAAGAAAAACGTGCGTTTATTATTGTA
CGTAATTAGCGCATTAACATCCTTTTTTATTCTACTTGTAGCGACTCTGA
TATAAATATGTGTACATAACTTTCTTACTTGTTTTTTAACTGATGATCGT
CTTTGGATGAAGACCGAAACgttttaaatattaaataaaataaaatatta
ttacaaaaTGAAGCTTCTAAGTTACATATTTATTATTAAGCTGATTGCCC
AAAcaaatttatttaagaaagtAATTGTCTTCCAGTCTCTTTCTCTCCAG
TCTGTATTCTTCTTGGCCTTTGACTGGGATTTTAAGTGTTCCTAAAGGGA
ATAAAATCTCCAAGTTTAGCCAGGTTCTATTGCACCGTTTTCAGGTGAGG
GTTGGAAGGTTTTACaaattcaggtgggggttggaagGGTGTTGCCCACT
ATGTAGAGATGAGGTAAAGTCTTTTTAGAAAATCTTAATAATTGAAAACG
ATAGCCTTTGACCCAATTAgcaaaaatatggtataatatcaggggttgcc
aagccaaatttttcagaaattgacctagaatgctaagcaacctcAGGGCT
AAGGCTAGAAATCGAGTTACCAATAGTGTGACcgattaaaatgtcaattt
taaaagtttaaatggCTTATTTCAATTGTTCCATCTGATAGAGGATAGAG
ATAGAAAAGTAGATGTCAAAAATGGTGTCATTTGTAAAAGTTCAGATATC
CCAAGACTTTTAAACTTTACTAGTCCACAGCATCATCCGAGGTGGGATGA
ACCCCctctttatttcttaaaaactattttgctttaaaaatgcCTTTCTC
CGCTAGGTAGGCTTTTACTTGACAagttttccatttttattataGAGCGC
ACATACCGAGAGTTCTTGCTGAGGGTGCAAGAACACTCCACGAATGACAC
ATCAGACGCAGCCTTGGGCTTCTGGGTTTGCAACTTGGGGACACAAATCC
CAAGACAGCGGCCCACCGGAGGAAAACGAAAACGCAACTGATc

Coding sequence (CDS) from alignment at sc0001868:17546..20938+

>TCONS_00038500 ID=TCONS_00038500|Name=TCONS_00038500|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0001868:17546..20938+ (Clytia hemisphaerica)
atgGCCGAAAACCTAGAAAATCAAATGGGTCAAATGCTTGAGCAGATACG
CTCAATGGATGAAGAAATTCAGTCGCTGAAATtacaaAATGCCAAAAGTT
CTGAGCAATCCGAGGAAGTGGAGGCCAAAGATATGACTGGAGAGAAATCA
GCAGAagagaaatcgaaaaaaaaacagaacgCTCCCGGACAAGCGATGGG
CAGTAGCAGCCATCATGACATATACAAATGTATCGAGCGCACATACCGAG
AGTTCTTGCTGAGGGTGCAAGAACACTCCACGAATGACACATCAGACGCA
GCCTTGGGCTTCTGGGTTTGCAACTTGGGGACACAAATCCCAAGACAGCG
GCCCACCGGAGGAAAACGAAAACGCAACTGAatgGCCGAAAACCTAGAAA
ATCAAATGGGTCAAATGCTTGAGCAGATACGCTCAATGGATGAAGAAATT
CAGTCGCTGAAATtacaaAATGCCAAAAGTTCTGAGCAATCCGAGGAAGT
GGAGGCCAAAGATATGACTGGAGAGAAATCAGCAGAagagaaatcgaaaa
aaaaacagaacgCTCCCGGACAAGCGATGGGCAGTAGCAGCCATCATGAC
ATATACAAATGTATCGAGCGCACATACCGAGAGTTCTTGCTGAGGGTGCA
AGAACACTCCACGAATGACACATCAGACGCAGCCTTGGGCTTCTGGGTTT
GCAACTTGGGGACACAAATCCCAAGACAGCGGCCCACCGGAGGAAAACGA
AAACGCAACTGAatgGCCGAAAACCTAGAAAATCAAATGGGTCAAATGCT
TGAGCAGATACGCTCAATGGATGAAGAAATTCAGTCGCTGAAATtacaaA
ATGCCAAAAGTTCTGAGCAATCCGAGGAAGTGGAGGCCAAAGATATGACT
GGAGAGAAATCAGCAGAagagaaatcgaaaaaaaaacagaacgCTCCCGG
ACAAGCGATGGGCAGTAGCAGCCATCATGACATATACAAATGTATCGAGC
GCACATACCGAGAGTTCTTGCTGAGGGTGCAAGAACACTCCACGAATGAC
ACATCAGACGCAGCCTTGGGCTTCTGGGTTTGCAACTTGGGGACACAAAT
CCCAAGACAGCGGCCCACCGGAGGAAAACGAAAACGCAACTGAatgGCCG
AAAACCTAGAAAATCAAATGGGTCAAATGCTTGAGCAGATACGCTCAATG
GATGAAGAAATTCAGTCGCTGAAATtacaaAATGCCAAAAGTTCTGAGCA
ATCCGAGGAAGTGGAGGCCAAAGATATGACTGGAGAGAAATCAGCAGAag
agaaatcgaaaaaaaaacagaacgCTCCCGGACAAGCGATGGGCAGTAGC
AGCCATCATGACATATACAAATGTATCGAGCGCACATACCGAGAGTTCTT
GCTGAGGGTGCAAGAACACTCCACGAATGACACATCAGACGCAGCCTTGG
GCTTCTGGGTTTGCAACTTGGGGACACAAATCCCAAGACAGCGGCCCACC
GGAGGAAAACGAAAACGCAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023086XLOC_023086Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038500-exon-sc0001868-1491911889:17546..17642TCONS_00038500-exon-sc0001868-1491911889:17546..17642Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1510915933:17546..17642TCONS_00038500-exon-sc0001868-1510915933:17546..17642Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1575043694:17546..17642TCONS_00038500-exon-sc0001868-1575043694:17546..17642Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1491911889:18008..18106TCONS_00038500-exon-sc0001868-1491911889:18008..18106Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1510915933:18008..18106TCONS_00038500-exon-sc0001868-1510915933:18008..18106Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1575043694:18008..18106TCONS_00038500-exon-sc0001868-1575043694:18008..18106Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1491911889:18386..18439TCONS_00038500-exon-sc0001868-1491911889:18386..18439Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1510915933:18386..18439TCONS_00038500-exon-sc0001868-1510915933:18386..18439Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1575043694:18386..18439TCONS_00038500-exon-sc0001868-1575043694:18386..18439Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1491911889:20791..20938TCONS_00038500-exon-sc0001868-1491911889:20791..20938Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1510915933:20791..20938TCONS_00038500-exon-sc0001868-1510915933:20791..20938Clytia hemisphaericaexon
TCONS_00038500-exon-sc0001868-1575043694:20791..20938TCONS_00038500-exon-sc0001868-1575043694:20791..20938Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038500-proteinTCONS_00038500-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001868supercontigsc0001868:17546..20938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12628	0.366099	0	0.207935	15.4416	14.2025	14.2387	18.7526	9.97927	9.77247	14.7414	11.5203	12.6442	12.959	4.14966	7.19469	8.35965	6.55595	1.3968	2.71678	6.64716	6.74134	3.79107	4.85619	20.9601	25.5774	6.98703	5.10208	3.18694	2.335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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