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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038488 ID=TCONS_00038488|Name=TCONS_00038488|organism=Clytia hemisphaerica|type=transcript|length=2054bp
CTTTATCTTCCACCCcacatgtacggacattttctaaAAGAGCCCAATTG
GCggtgattgttttgtttttcttttcttttttacatcCATTACCCTCCTG
AAAAGGccaagttgtaaaaataattgtaACAAGGTGCTCAATAAACGGGT
GGATTGGATCTGAATTAGAATACCATTAAACACGGATTTATAGTTCCCAT
TTTCCAAGTAGACGTTTGAACTTTGTACATCTGAATACGTTTAATACGCC
CCtaataaaaatatgtttatttgGCAATGTTGTTGTTTATTTGGCAATAT
TATTATTGGTACATTGTTTAGTATACCGAACGATTGTTCTTAGGTAGAGT
CAGCGTGACAAACATTCAGTTTGGTCAATCTTTAGGTTCCTATTCTTATC
ATATCACTATTTTGTTTATCCGTAACACAACTTCTCCTTTTTCCAGGGTT
TCAGTCCTACGTCATCCTACTGGTCCAGACGGTACAACTGGATTTGCTCT
CAAGCGGAAATCGATCGCCAGTGAAGCGGAAATGACCACCGCCGCTACCA
CTGACGCTACTGCCACTAACGAAGAATTGGTACTGGAGAATGGTGCAGTT
TGTGAAGATACTGCTATTAAAGAATCGATGATCAAAGAGCAAGTGGAAGC
TCTGTCAGTCGCTTAAATTCTCAACCAACTGTTCATCTCTGTACAAATCT
TTCTCTCTGTTTCTCCTTTATTCTACTCTCTTCACTTCTATCAACCTTAG
AAGCCTTACATAAAAGAGACTTCCCATCCTTCACAATCTAATTTATGGAT
GATTAGCTGTTAAATGCTATTACATCAACTTGATTTAGCTCCCCGAATCT
AATAACCTGAAATCTAAGAAGTAACTAAACAAATGGGGTCAAATacaaca
caatttttttttcgatgaaCGAAACCttcggaatttttaaaaaagaatga
agtgtttttttttttcgtgttttttgtttgtttgtttttgggCCATGATT
CCACACTTTAAAAGTTGTTGTTGTTCTATATTAGAATTATTTATTCCCAA
ATTGTAAATCCTAtgttttttctctctctttttgtCTTCATCTCCTTAAG
TTTCAGTATAACTGGAATCAACTCTCATCTCTTcctctcaaaatttcaaa
ccgttgttttgttttcaaaacattgtAATCGTTTTTGTGTATAGTTTTTT
TGTCTAATGTTTTTTGTTGACATTTATTTCCCAAAAGAATATTAGTTGTA
TTCGCATATACATGACTTGACACGACGAAAAGGTTAGTTCCTGTATATGT
AAAGCAACCAGTATTTTTTAATAATCTGAGTTAAAGGAATTTTATACCAA
CTGTTTTTAACTTGGGAgtaaaacaatataattttatCGTTTAGTTATag
aaaaaattagaattttgcatTTTGAATGTGTAGACAGACAAAAACcctca
aaatattaaaaatgtaatcatattcgaaattttttttacatcagAAAGTT
TATACATAGCTTTTATTATTAGATCAGATCTTGAACATATTACAGGGGGA
ATGAAATTCAGGATCCAGGGGAAATTTGTTACATACTGCACAAATGAAGT
CCCACGCTACTGTAcaagaattttctcaaaaactaatTGTAACTGACGCT
TTTTGGTGGTTTTGCACAAATTCAAACCTGAACTAGTCAACCTTACAGAT
CCCGGCTAAAgtatattactgtattacgtTCACTACCGTTGTAACTAGAA
CAATAATATTctccaatatttttttgttttatgtttgttTTGTATTGCAT
ACAGAAAATGCTTTTTAACAATCTTTCGTGTTAAAGAAAGCTAACTCCAA
AAAAAAANtatttttttgttttatgtttgttTTGTATTGCATACAGAAAA
TGCTTTTTAACAATCTTTCGTGTTAAAGAAAGCTaactccaaaaaaaaaa
aagaataaatatcgaaaaaaattgaataaaaagacgtaaaatacttttaa
aaatgttgaaaaaaaatgaaaatcatgaaaaagaagcatcaaataactga
aaat Run BLAST on NCBI transcript from alignment at sc0001862:18739..20792 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038488 ID=TCONS_00038488|Name=TCONS_00038488|organism=Clytia hemisphaerica|type=transcript|length=2054bp|location=Sequence derived from alignment at sc0001862:18739..20792 (Clytia hemisphaerica)
attttcagttatttgatgcttctttttcatgattttcattttttttcaac
atttttaaaagtattttacgtctttttattcaatttttttcgatatttat
tcttttttttttttggagttAGCTTTCTTTAACACGAAAGATTGTTAAAA
AGCATTTTCTGTATGCAATACAAaacaaacataaaacaaaaaaataNTTT
TTTTTTGGAGTTAGCTTTCTTTAACACGAAAGATTGTTAAAAAGCATTTT
CTGTATGCAATACAAaacaaacataaaacaaaaaaatattggagAATATT
ATTGTTCTAGTTACAACGGTAGTGAacgtaatacagtaatatacTTTAGC
CGGGATCTGTAAGGTTGACTAGTTCAGGTTTGAATTTGTGCAAAACCACC
AAAAAGCGTCAGTTACAattagtttttgagaaaattcttgTACAGTAGCG
TGGGACTTCATTTGTGCAGTATGTAACAAATTTCCCCTGGATCCTGAATT
TCATTCCCCCTGTAATATGTTCAAGATCTGATCTAATAATAAAAGCTATG
TATAAACTTTctgatgtaaaaaaaatttcgaatatgattacatttttaat
attttgaggGTTTTTGTCTGTCTACACATTCAAAatgcaaaattctaatt
ttttctATAACTAAACGataaaattatattgttttacTCCCAAGTTAAAA
ACAGTTGGTATAAAATTCCTTTAACTCAGATTATTAAAAAATACTGGTTG
CTTTACATATACAGGAACTAACCTTTTCGTCGTGTCAAGTCATGTATATG
CGAATACAACTAATATTCTTTTGGGAAATAAATGTCAACAAAAAACATTA
GACAAAAAAACTATACACAAAAACGATTacaatgttttgaaaacaaaaca
acggtttgaaattttgagaggAAGAGATGAGAGTTGATTCCAGTTATACT
GAAACTTAAGGAGATGAAGacaaaaagagagagaaaaaacaTAGGATTTA
CAATTTGGGAATAAATAATTCTAATATAGAACAACAACAACTTTTAAAGT
GTGGAATCATGGcccaaaaacaaacaaacaaaaaacacgaaaaaaaaaaa
cacttcattcttttttaaaaattccgaaGGTTTCGttcatcgaaaaaaaa
attgtgttgtATTTGACCCCATTTGTTTAGTTACTTCTTAGATTTCAGGT
TATTAGATTCGGGGAGCTAAATCAAGTTGATGTAATAGCATTTAACAGCT
AATCATCCATAAATTAGATTGTGAAGGATGGGAAGTCTCTTTTATGTAAG
GCTTCTAAGGTTGATAGAAGTGAAGAGAGTAGAATAAAGGAGAAACAGAG
AGAAAGATTTGTACAGAGATGAACAGTTGGTTGAGAATTTAAGCGACTGA
CAGAGCTTCCACTTGCTCTTTGATCATCGATTCTTTAATAGCAGTATCTT
CACAAACTGCACCATTCTCCAGTACCAATTCTTCGTTAGTGGCAGTAGCG
TCAGTGGTAGCGGCGGTGGTCATTTCCGCTTCACTGGCGATCGATTTCCG
CTTGAGAGCAAATCCAGTTGTACCGTCTGGACCAGTAGGATGACGTAGGA
CTGAAACCCTGGAAAAAGGAGAAGTTGTGTTACGGATAAACAAAATAGTG
ATATGATAAGAATAGGAACCTAAAGATTGACCAAACTGAATGTTTGTCAC
GCTGACTCTACCTAAGAACAATCGTTCGGTATACTAAACAATGTACCAAT
AATAATATTGCCAAATAAACAACAACATTGCcaaataaacatatttttat
taGGGGCGTATTAAACGTATTCAGATGTACAAAGTTCAAACGTCTACTTG
GAAAATGGGAACTATAAATCCGTGTTTAATGGTATTCTAATTCAGATCCA
ATCCACCCGTTTATTGAGCACCTTGTtacaattatttttacaacttggCC
TTTTCAGGAGGGTAATGgatgtaaaaaagaaaagaaaaacaaaacaatca
ccGCCAATTGGGCTCTTttagaaaatgtccgtacatgtgGGGTGGAAGAT
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038488-exon-sc0001862-1491911889:18739..20792 | TCONS_00038488-exon-sc0001862-1491911889:18739..20792 | Clytia hemisphaerica | exon |
| TCONS_00038488-exon-sc0001862-1510915933:18739..20792 | TCONS_00038488-exon-sc0001862-1510915933:18739..20792 | Clytia hemisphaerica | exon |
| TCONS_00038488-exon-sc0001862-1575043694:18739..20792 | TCONS_00038488-exon-sc0001862-1575043694:18739..20792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001862 | supercontig | sc0001862:18739..20792 . |
Blast
The following BLAST results are available for this feature:
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