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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038487 ID=TCONS_00038487|Name=TCONS_00038487|organism=Clytia hemisphaerica|type=transcript|length=994bp
AAAAAAATATTTCTCATGATGAAGGTTTGGAGGCTGTTAGAAAAAAACTT
GACCAAAGGCAAGACAAAAAAATCTCAACTGAATCTTTGGTTGAACTTGC
TGAATGTGTTCTAAAAAACAATCATTTTGAACATAATGGTCAATTTTTTA
AGCAGAAGAGGGGTACCGCAATCGGGACCAAAATGGCCCCTCAATATGCT
ATTACTTTCATGGCAGACTTGGAGGAAAGGCTTCTGGGTGCTTGTGAGTT
AAAACCTAAAATCTGGTGGAGATACATCGATGATATTTTTATGATCTGGG
AGCATGGGGAAGAGAGCCTTCAAGAATTCATGAAAATGATTAACAGCTTT
CATCCCTCCATCAAATTTACCTTTGAATACTCTCCGACTTCTGTCAATTT
TTTAGATGTCCAAGTCATTAGGGTTAATGATAAGTTAGTGACGGACCTGT
ATGTCAAACCTACTGATACCCATCAGTATATGATGCATCCTCGTGCCACG
CATTTCATTCAAAAAAGGCTATCCCATATAGCCAAGCTTTGCGTTTAAAT
CGCATCTGTTCTGAACAATCTTTTTTTGACCTTAGATGCGACCAGCTAGC
ATTGTGGCTAAAAAAGCGAGGATACAGTGATAAACTGGTTCGTCAAGAGA
TCCTTAGGGCCAGAGAACCGAAGCGAGATGATTTGCTCTTTAGAGAGCAA
AACAATAAAAAAACTCGTGGACGTAAGCCGGTGTTCAATATAACTTATCA
TCCTGCCTTTGCCAAAATCAAAAATGTCTTGCAGGACATTCAGGTACTCC
TCTCAGCGGCGAATGAAGAACATCGCAAGGTGTTTTCTGATGTGCCTATT
GTTGGCTTTAAGAGAGGCAAAAGCCTCAAAGACCTTCTTGTTCGATCTAA
ACTCTCAAAACCGAAGAAGGCAGACGGCCAATCTGAGGCATGTCAAAAAA
CACGCTGCTTGATATGTCCTTCTATTTCTAAAACAAAATCTTTT Run BLAST on NCBI protein sequence of TCONS_00038487-protein >TCONS_00038487-protein ID=TCONS_00038487-protein|Name=TCONS_00038487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
KNISHDEGLEAVRKKLDQRQDKKISTESLVELAECVLKNNHFEHNGQFFK
QKRGTAIGTKMAPQYAITFMADLEERLLGACELKPKIWWRYIDDIFMIWE
HGEESLQEFMKMINSFHPSIKFTFEYSPTSVNFLDVQVIRVNDKLVTDLY
VKPTDTHQYMMHPRATHFIQKRLSHIAKLCV Run BLAST on NCBI transcript from alignment at sc0001862:5009..6002 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038487 ID=TCONS_00038487|Name=TCONS_00038487|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at sc0001862:5009..6002 (Clytia hemisphaerica)
AAAAGATTTTGTTTTAGAAATAGAAGGACATATCAAGCAGCGTGTTTTTT
GACATGCCTCAGATTGGCCGTCTGCCTTCTTCGGTTTTGAGAGTTTAGAT
CGAACAAGAAGGTCTTTGAGGCTTTTGCCTCTCTTAAAGCCAACAATAGG
CACATCAGAAAACACCTTGCGATGTTCTTCATTCGCCGCTGAGAGGAGTA
CCTGAATGTCCTGCAAGACATTTTTGATTTTGGCAAAGGCAGGATGATAA
GTTATATTGAACACCGGCTTACGTCCACGAGTTTTTTTATTGTTTTGCTC
TCTAAAGAGCAAATCATCTCGCTTCGGTTCTCTGGCCCTAAGGATCTCTT
GACGAACCAGTTTATCACTGTATCCTCGCTTTTTTAGCCACAATGCTAGC
TGGTCGCATCTAAGGTCAAAAAAAGATTGTTCAGAACAGATGCGATTTAA
ACGCAAAGCTTGGCTATATGGGATAGCCTTTTTTGAATGAAATGCGTGGC
ACGAGGATGCATCATATACTGATGGGTATCAGTAGGTTTGACATACAGGT
CCGTCACTAACTTATCATTAACCCTAATGACTTGGACATCTAAAAAATTG
ACAGAAGTCGGAGAGTATTCAAAGGTAAATTTGATGGAGGGATGAAAGCT
GTTAATCATTTTCATGAATTCTTGAAGGCTCTCTTCCCCATGCTCCCAGA
TCATAAAAATATCATCGATGTATCTCCACCAGATTTTAGGTTTTAACTCA
CAAGCACCCAGAAGCCTTTCCTCCAAGTCTGCCATGAAAGTAATAGCATA
TTGAGGGGCCATTTTGGTCCCGATTGCGGTACCCCTCTTCTGCTTAAAAA
ATTGACCATTATGTTCAAAATGATTGTTTTTTAGAACACATTCAGCAAGT
TCAACCAAAGATTCAGTTGAGATTTTTTTGTCTTGCCTTTGGTCAAGTTT
TTTTCTAACAGCCTCCAAACCTTCATCATGAGAAATATTTTTTT Coding sequence (CDS) from alignment at sc0001862:5009..6002 >TCONS_00038487 ID=TCONS_00038487|Name=TCONS_00038487|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0001862:5009..6002 (Clytia hemisphaerica)
TTAAACGCAAAGCTTGGCTATATGGGATAGCCTTTTTTGAATGAAATGCG
TGGCACGAGGATGCATCATATACTGATGGGTATCAGTAGGTTTGACATAC
AGGTCCGTCACTAACTTATCATTAACCCTAATGACTTGGACATCTAAAAA
ATTGACAGAAGTCGGAGAGTATTCAAAGGTAAATTTGATGGAGGGATGAA
AGCTGTTAATCATTTTCATGAATTCTTGAAGGCTCTCTTCCCCATGCTCC
CAGATCATAAAAATATCATCGATGTATCTCCACCAGATTTTAGGTTTTAA
CTCACAAGCACCCAGAAGCCTTTCCTCCAAGTCTGCCATGAAAGTAATAG
CATATTGAGGGGCCATTTTGGTCCCGATTGCGGTACCCCTCTTCTGCTTA
AAAAATTGACCATTATGTTCAAAATGATTGTTTTTTAGAACACATTCAGC
AAGTTCAACCAAAGATTCAGTTGAGATTTTTTTGTCTTGCCTTTGGTCAA
GTTTTTTTCTAACAGCCTCCAAACCTTCATCATGAGAAATATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038487-exon-sc0001862-1491911889:5009..6002 | TCONS_00038487-exon-sc0001862-1491911889:5009..6002 | Clytia hemisphaerica | exon |
| TCONS_00038487-exon-sc0001862-1510915933:5009..6002 | TCONS_00038487-exon-sc0001862-1510915933:5009..6002 | Clytia hemisphaerica | exon |
| TCONS_00038487-exon-sc0001862-1575043694:5009..6002 | TCONS_00038487-exon-sc0001862-1575043694:5009..6002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001862 | supercontig | sc0001862:5009..6002 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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