TCONS_00038486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038486
Unique NameTCONS_00038486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038486 ID=TCONS_00038486|Name=TCONS_00038486|organism=Clytia hemisphaerica|type=transcript|length=1179bp
attAGCGAGCAGAATGATCTTCAAACCAACGAGGGCCAACATGGCGGATA
GTCCCAAACCAAATTAACCACCAAAAACCCAACATCAAACCATCATTATT
CTTCAAATTTGATATGCTCACATACTTCAAAACAACAAACATCAAGAAAc
aataaaaagaacaacaaagcAGACATTGGGACTAAGGAAAAGAATATTTC
ATATTTTGTACAGAAGATCAAAATCTACCAAAGAAAGAACTAAACAGATT
TATTGCAAGCCAGGGCCAAAACAATTTGCAAGCTCAATATGAGTTACAAT
AAGCGTGAAAGAAATTCATCAATGAACTCGTATGGAGGCAACAACAGGAA
TTCATCACCACACAGCCAATACCATCACAGCAAAGTGAACAACAATCGCC
AACGATCCACATCATCACCAGTCACTGTATCACAAGCAAACGACTCACCC
TCATCACAACATAACCAATACTATGGTAAAAAAGAGAAAGGCATTGTTGA
GAAGTTGTTGAATTCCTACGGGTTTGTTGAGTGTGCAACAACTGGGAATC
GAGTTTTCTTCCACTACAGTGAATTTGAAGGAGATCCAAATCACTTACAA
GTGGGAGACTGCTTAGATTTCGTACTGACAACTGATCCGAGAAACAACAA
ACCGATTGCCATCAAATTAAACAAGCTTCCAGCCGGATCGGTGGTCGTTG
AAACATTATCAGAAGAATCCTGCATCGGTAGGATCGAAATGGAAGCTAAA
CCTCAACGTAACGGAGAAGCTGAGTCGACACTTGGTCGAGTGAGCTATGA
CAAAAGTGGGGAATTTTTCTTTCTCCCATTTTCGTTAAATGATGTTGCGA
AAGGAGAAACAATCAATAAAGGAGATACAGTGGAATTTTACATTGCCACA
AACAAGAGAACTGGCTCAATGAAAGCCAGAAAAATTCGATACTCTGACCC
TGCTAAACAGGTCAAAACAGTTCAAGGAATTGTAAGCTCACTGAAGGAAG
CATATGGTTTCATTGAACGTGCTGATGTAGTGGACGAAATCTTCTTCCAT
TATTCTGAATACAGTGCTGATATCAACGAACTGATGATCGGTGATGATGT
CCAGTTCAATTTACAAGACAGACTGCGATATTAGTTTGGAGTCTAAATTC
ACTTACAACAATAGAGTTGGCTCTAATGT
Run BLAST on NCBI

transcript from alignment at sc0001862:27201..35994-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038486 ID=TCONS_00038486|Name=TCONS_00038486|organism=Clytia hemisphaerica|type=transcript|length=8794bp|location=Sequence derived from alignment at sc0001862:27201..35994- (Clytia hemisphaerica)
ATTAGCGAGCAGAATGATCTTCAAACCAACGAGGGCCAACATGGCGGATA
GTCCCAAACCAAATTAACCACCAAAAACCCAACATCAAACCATCATTATT
CTTCAAATTTGATATGGTAAGCTCTCAATTATCTGTTATTTATTCATCAA
ACCTTCATGAAACTTTTTTTTATCGTAGATAATCTTTCTAGCCGATTAGA
TCTTTAGAAATTGCGGGAGAACTTTTATTGCCATTTTTCTCATTATTGTT
GTCAATCTTCTTCAACTCAACTACCCACCAAAGACAAATAAATTACCTTT
CAAGTTTTTTTGATAGTTTAGAAAATAAATGATTGATTGCAGGTCTGGCG
GAACAACCGTAAGAGTGGGTGAGTAGGCTGAAGGCTCAAAGCGAGATAAA
ATTATTTGTTAAAAAATTTATATAAGACAAAAATCTCATTTGCTTAAAAA
AGTTGGATTGCTGATATCTCGCCAGTCTCCCGGGTTCCGCCAGGTCTGGA
TTGAATTTTAGTTTTGTGGGAAAGGGTTTACTCTTACCTTAAAATCTAAT
TAAAATCAGGGTGGCCACTAGTCCTGGAAAGTCCTGGAAAGTCCTTAAAA
GTCCTGGATTTTGTTTTAGTCCTGGAAAAGCGTCCTGGAAATTCAGAAAA
TTGATTAAAGTCCTGGAAAAGTCCTGGAATATTTTTCCTTGTTAGTCCTG
GAATTTAACCTTTCTCTATAAGCGATCAAGCGTGAAGGAATTTGTATTCT
GATCAGATATTTATTGCTTTTATTTTCTGTATTCTAATATCTGTGTTTAC
AGAAGTCATAAATATTGTCAAAATCGTCAAACATAATGGCATACTCTCGG
GTAGCAATGGACGGGGTTTGGAATTAAGCGGTTGGAAAAAATCTCAAAAT
CTAATCAGGGAGGTTGGAATTAAAATGCCTTGGGTGGAAAACTTTGGAAA
AGCAGGCTAATACAGAAGAATTAGGGCCAAAGAGGGAACTATAAAAACAT
TTTCCCAAAACTTAATTAGCAGGGGGTGGGGTGGAATAAGAATGTCATGG
GTGGAAAATTTTTCAAAAAATTAATTTGCGAGGGGTACACTTATTAGGTA
CCCAAGAGTAGTTTGGCTAAAAGCCAAAAGCATTATCGTCTAAAAACTGG
TTCCTATGAGACACTTATAAAACACCAGCTTTATGAATACACCCATTGAA
GTTTTTCAGAATATCACGTCCTATCTTCGAAAATATTATCTTGTTGCGTT
TCAAAGAGATAATCCTATGTTTCTGTTTCTAAAAATGTGATATTTTCCAA
TTGTTGATGAAAACGATGATGCACCACTAAAATTGTTTAAATTGGCTTTT
TGGGGGGAGAAAGGGAAAGGGGCGCCAAAACCTTTTTGTTAAATCTTATT
AAAAGTTGGACTTTGTGCGTCTTAAACTGCGCCCTGAAATCAATTTTGGT
GAAATAATTTTTCAAATTTTTCATGCTCGCTTTGCTCGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGCTTTGCTCGCAATAAGATTTTGGTAATTTTTTTGAAATCTAGT
TTTGCAATTTTTTTTGACAATCTAGCAGTTTCGAATGGTAATCTAACTGT
GCGCCTCCATGACCAATTAGCTGAATGCAATTTAAAACATATAACCCTAT
TTTTTTCGCTCGAAAAGTAATTCGAAATCCGTATTGGTTACAAAAATACA
AGAGTAATGTACGGTTAACTCTCACTTTACAAAATCTTTGTCGCCTAAAA
ATATCCTCAACAAGTAAGACAATTTGTAAGATTCTTTTTAAAGCTATGTG
ATTGTCTATGCAAATCTTCTTTATTGGCCCAGCTAGCTTTAGCGTAGTGG
GCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCGATACGCGTTTTATTTCAAGCACAGGCTAGTAC
ATATTGTGAAAAATTTGATTGGCTGAAACATGTCTCTTTTAGAACATGAT
TGGCAGAATAAAAAACAATTGCAATCGTCTTTATTGGTTTAAAACATAAA
AGGAGAAAATACAATAACTACTAAAACTATAAGAATATAACAGATGTAGT
ACGTTTTAAGAAAAACAATGTGATTTACATAGAGTAACAAACCTTCTTCT
CTTTAGGAATATGTTCTTTTAAAAAAGTTGTTTTTACATTTCTCTATCAT
GTGAACAGTTCAGTGAACAGTTCAGTTGTTCACGTGCTAGGAACAAAACA
TTTCTGTATATAGATTAAATATTTTGATTTATTTCTCATTGTTGCTAATA
AGAGATAGGTGAGTGGTTTAAGGCGTCTTTGGCTTGTACTTGCGACTTTA
GGTTCAAATCCTCTCTGTTACTTAAGTCTTGTTCAGTTCATATTTTTATT
CGCTGGGCCTTCATGCCCTCTGGGCTTCTTGTCTTCTTGGTTAAATCAAA
TTGGCCCATTCTCTATTTCGTTGCTTTGGAGCAAGTTAGAAAAAGCTTTG
CACCTCATTTTTACGTTAATATTTTTCACATACATAGCTCAGTTCCGAGA
GAAAATGCTTTTCTTTTAGGATAAAAAGTCCTGGAAAAGTTTAAAAACAT
CCTGGAAAAGTCCTTGAAAAGTCCTGGAATTTGACTTGTTTTTTTGAGTG
GCCACCCTGTAAAATGACCAGTCCGTCACACAGTGCCATACTGTATAAAG
GCAGCAGTTACAAATATCTTCGTTTCACGTCGCCCGACTGACTCTCGAAA
AGTGAGTAGAATTGAGTCGGTGAGTCGGTAAAATTGTCGGACTTTTTCTG
TCAATTACATTTCCTTCGTTCAAAAATTTTATTATTGCCGATTCGTAGCA
TGTTGACTGTTTATCATTATATACATGTGCCATTTGGGTCGGAGATCACA
GTGTTCAAAGGTAATAATTTTAAACCACCCATAACATAACACGCGGTTGT
TTTGGCTGCCTGCTGGCTGGCAGTTTTTCCTTCAAGAATACACTCCAAAA
AATGGATGATGGAGGTCTTACTTATAATGGAAAACCAGAAAAGTTTTCTG
GACCGACCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCATAGGTGTACCTTGGAGC
ACCACAAGGATATTTAGAACAGACCCACCACGACAACATTTTCCGTGGAA
GGCTATTCTAAGGCATTCGCATTGTAAACATGTCCAGCCCATCTGAGCTA
TTGACGACAAATGTAGGTGTCTTGATTCCAGAAAGTTTATCAAGAAGATC
AGATGTACATTTACGATCGAGTAACTCAACAAAAATTGAGCTTTTTGTCT
ACTGATGCTACAACGTTCATTTTTACACCAGTGGTAGTTCAACCTTAGGT
TAAGAAGGTTGTCAAATTTTATGGCAAACAGAAAAGCTCTTCGGAAGATA
TAGGCCCCGAGATATCCCTTTCGAGCACTTTTCTGTGAAATATCAAATCT
CCAAATTTTTACTTAAAACAGGGGTAGTGATGATAAAACAGTTTTTCAAA
AAATCATCAAACAGTGAGCAAATTTTTCTCTTGATACTTACCTTCTTTAC
ACATAAAAATACCAAAGAATGCAACCGTGTTCGTCAACTCTTGTTACGGA
ATTTAAAAAGATGGTAAAACAAGCTATTCCATAATATTTTTGGGAAAGTT
GAAAAAGAGTTTTAGAAATCTCCAAGAGAGGTTTTGATGTTACTGTCTGT
GTGTGCTTTGTGAGAAATGAAAAAATAGATCACTATTCCTCGGCTAGTAG
CTCAAAGGATTTGGGCCTGCATTGAGTTTGCTCGCGTTGGAAATGTTTGT
GATGTGCAATTAAGATGGAGAAACTGTTGGCAAAATATAAATAAGAAAAA
TCAAGGATAAAAAAAAACAATAAAATTGTGTTTTTGTCATTTTGTCTTAT
TTATAGCGTGATTGCTGTTTTTGATGATTCGACATGGGAAAAAAGTCAGT
CTTGTTTGAATAACTTTCGAACTACTTTTTCAAATTTAATGTATGATAGC
TCAAAATTCATGTTAGAGCATCCTCTATATACGATAAAAAAAGAATGAAC
AAAATATTTAAATCCTGAAGCTCAAAATATCTCGACAAACCCGTATACTT
TTTTTTGGTGCTCCCGGTATGAAATCAGAAATTACTTGATTCCTTTTTTT
GACACCCTTTGACTCTAGGAAATTTCAATCTGTTTAAGGTCTTCTCTTTT
AAAATTTGGCCGCATTTCTGTAAGTTGACATCTGCCTGTGGCATTTTTAA
TGGATTAAGGCAAGGGGTGATGCTGATGATTTAACATACAATAGCAAGAA
AATTATTTATTTGTGTTTTTACAGCTCACATACTTCAAAACAACAAACAT
CAAGAAACAATAAAAAGAACAACAAAGCAGACATTGGGACTAAGGAAAAG
AATGTAAGTTTTATAATATTATCAGGTCATTTTTACACTCATCCAAGGTG
AATAAAGGTGGTTTTGCCCAATAGCATTTTTCTTAAGAACTAAAAGTGTA
ACATGCACTTTGTTATTTTCCATCTTACTGCCTTTCTATCTATTTTGTAC
TAAAATAGCCAAGGATAGCGGTATCAGTATTTTTTATTGGAACAATTAGT
TAGGACTAATGATGAGATTATGCATTCTCACGTCTAATTTGATCTTTTTT
AGATTTCATATTTTGTACAGAAGATCAAAATCTACCAAAGAAAGAACTAA
ACAGATTTATTGCAAGCCAGGGCCAAAACAATTTGCAAGCTCAATATGAG
TTACAATAAGGTAATTTATTTAAATAACATGGTTTTCAAATGAGTTGATA
GATTATTTATTTACTTTACTACTTTGGTCTTGTAAATGACAACTTGATTG
GAAATGTAATTTCCCAAAAAATTTGAAAAGCTGATCGACCCACTCTCTTA
TATTGGTCTGACACCAGCTTTCTGCCTGCTTAGACTTTTCTGGCAATACC
TTGATAAAAGTCTGCTTCAGAATGCAGTTTTTTCCCAAGTTGATATATCG
CCACTAAATTACTAGGCCCCCCTATTTTCAGGAACATGACCAAGTCCCTA
GTGAAAAACTTTGGATATTAAACTTCCAAAAGGTTTTTTTAGTTTTTATT
TTTTCGCTGCTGGAGAAAAACATACCTTATTACATGAATATAAGTATGGA
AGCATTTAACGGCCTTGAAAATAACGTAACATAAATTTACACGAACATGT
GCAGGTATAAACTTTAGAGTTTAGCTTTAAAAAACTAATGGGATTTTTAT
TAAAACGAAAATTTTCCACTTGTGTTAATTACACATCTCCTAATATTCAT
AAAGGTAGCCCAATCTTTTTTTGATGGACTTTAACCCGATTGGTACCAAC
ACAAAGAGATTACTTAAAAAGTTAGAAAAGAAAATTTTCTTGGCTGATAC
ATAGTCAATAAAAAAATTTGCTGTGCTAGTAAAAGATAAATCTCAGCTGC
TAAAAAGCAGACATTTTACTGTACTGTTTTGGGCTGATCAGTCTGGATTG
GTCTTTCAGGTTCTTAAATTCATTTAAGGAGTCACAAATTAGTTTACTTT
TAAACTTAATTGTTATATGACAATTATTTTTCAAGAAATTTGCCTCATTT
ACCTTCTCTCTTGGTCTCCAACGAATTTGTGGTCATATTTTTAAATCTTC
TGTTTTGAAAAATCTAAATCCCGGATTTCCATATGACATTATCAAGATTT
TAATACGCTGACACTCCTTTTGTTGTTTTCTTCATTCAGCGTGAAAGAAA
TTCATCAATGAACTCGTATGGAGGCAACAACAGGAATTCATCACCACACA
GCCAATACCATCACAGCAAAGTGAACAACAATCGCCAACGATCCACATCA
TCACCAGTCACTGTATCACAAGCAAACGACTCACCCTCATCACAACATAA
CCAATACTATGGTAAAAAAGAGAAAGGCATTGTTGAGAAGTTGTTGAATT
CCTACGGGTTTGTTGAGTGTGCAACAACTGGGAATCGAGTTTTCTTCCAC
TACAGTGAATTTGAAGGAGATCCAAATCACTTACAAGTGGGAGGTATGTG
ATCATTTTTGTTCGTTTTTTTAAAAGGGCAGATAGCTTCCCCTGCGGAAA
TCTTTGCGATAATTGCATTTCTGAACTCTTTTCACAAAAGTTTCTGCCAG
GTAAGAAAGTCGCTCTGCTTTGTTCTTTTTGTTAAATTTTTGTCTTTTTC
ATTAAGTCTTTCATTAATAAAATGTATACTTTACAAAAATTTAGAAGAAT
CCATAAATGTTTTATTATTGGTATTCAAAAAAGACACCACAGCCAACCCT
TTTAAAAGTTTTTATAATGAGATTTTGATTGTTCCTAAACCAAACCATTC
TTACACACGTTACGTTTAATAAACCCATTCTTGATGATTTTCTCTGATAG
ACTGCTTAGATTTCGTACTGACAACTGATCCGAGAAACAACAAACCGATT
GCCATCAAATTAAACAAGCTTCCAGCCGGATCGGTGGTCGTTGAAACATT
ATCAGAAGAATCCTGCATCGGTAGGATCGAAATGGAAGCTAAACCTCAAC
GTAACGGAGAAGCTGAGTCGACACTTGGTCGAGTGAGCTATGACAAAAGT
GGGGTGAGATAAAAACTTAAAGTCCATGATCACTGTTTTTGAACAGAAAG
TTTGTTGCTTTCATACAAAAAATTTTAACAGAAGATTTTCTCTTTGACAA
TAATGTGCCCAACCGCATAGTCTAAAGAGATATTGCTTCCAACCTAATGT
CATGATCACAGTGTAGCTCTACATGGGTATAAACAATTACAAAGTATACG
CTTAACTTCGAAAACTTCTTTTTTTCATCAGGAATTTTTCTTTCTCCCAT
TTTCGTTAAATGATGTTGCGAAAGGAGAAACAATCAATAAAGGAGATACA
GTGGAATTTTACATTGCCACAAACAAGAGAACTGGCTCAATGAAAGCCAG
AAAAATTCGATACTCTGACCCTGCTAAACAGGTCAAAACAGTTCAAGGTT
AGTATTTACATGAGTCATGTCCATCCTGGCAGCAAAGCATAAGCTGAAAA
AGTTAAACCTGAAGTAAAAGGGTTTCTCTAAAAAAGAAAATATATGAAAA
TTTTGATCTGGAAATGGGCAATTACAACAAAATGTTGAAACCATTCGATT
GGCAAGGGGATGGAATTCGACGTTGGGGTCCTGAGTGAGGTAAACAATAA
AAAAGATTTCAAGATGTTCAGAATTCCACAGGGCTTTGGGCAAATAATTC
ATTGGTTTCAAACGTTATCATATTTGATTATGATTTTCAGTGCGTTTGAC
CACCATAAAGATAAGTCACAAAAACCTTTGTTCACACAACTTTAACTCAT
TTTTCGTCATTTTTTCAGGAATTGTAAGCTCACTGAAGGAAGCATATGGT
TTCATTGAACGTGCTGATGTAGTGGACGAAATCTTCTTCCATTATTCTGA
ATACAGTGCTGATATCAACGAACTGATGATCGGTGATGATGTCCAGTTCA
ATTTACAAGACAGACTGGTAAGTTTGACGACACGCCAATCACCTTTCCCC
TTCCCATTCATTGCACCACAAAGATGATTTGGTTCGACTTAACCAGAGTC
AAATAATTCCTAAAATCTAAAGCCATTGGATTTACAAGTTTAAAAATTTC
TTCCGTCTCAGCGAAGTTTATATAAAAAGAAGACGGCTTTCCCGTCTCAA
AATCCTGCATAATTCATCAAAACTTCAATATTAAGGGCTTATTTGCCCTG
CAAAATTCATTCTCCGATTCAGACAAAAAACCTTACTTTAATCACTGATA
TATGTGCTCGCAGATGAAACGGCTTGTCTGTCATTTTGGCCCTGGCGTAC
TCAAACGCATCCCCACTCATCATTTACTCAAACCTTGGTTTAGTACCAAA
CGAATTTGAAAAATTGCTGGAACTGCCATCGTTCTTTTAGCGATATTAGT
TTGGAGTCTAAATTCACTTACAACAATAGAGTTGGCTCTAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023073XLOC_023073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038486-exon-sc0001862-1575043694:35879..35994TCONS_00038486-exon-sc0001862-1575043694:35879..35994Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:30792..30870TCONS_00038486-exon-sc0001862-1575043694:30792..30870Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:30435..30542TCONS_00038486-exon-sc0001862-1575043694:30435..30542Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:29152..29455TCONS_00038486-exon-sc0001862-1575043694:29152..29455Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:28592..28794TCONS_00038486-exon-sc0001862-1575043694:28592..28794Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:28198..28363TCONS_00038486-exon-sc0001862-1575043694:28198..28363Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:27678..27826TCONS_00038486-exon-sc0001862-1575043694:27678..27826Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1575043694:27201..27254TCONS_00038486-exon-sc0001862-1575043694:27201..27254Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:35879..35994TCONS_00038486-exon-sc0001862-1510915933:35879..35994Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:30792..30870TCONS_00038486-exon-sc0001862-1510915933:30792..30870Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:30435..30542TCONS_00038486-exon-sc0001862-1510915933:30435..30542Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:29152..29455TCONS_00038486-exon-sc0001862-1510915933:29152..29455Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:28592..28794TCONS_00038486-exon-sc0001862-1510915933:28592..28794Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:28198..28363TCONS_00038486-exon-sc0001862-1510915933:28198..28363Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:27678..27826TCONS_00038486-exon-sc0001862-1510915933:27678..27826Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1510915933:27201..27254TCONS_00038486-exon-sc0001862-1510915933:27201..27254Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:35879..35994TCONS_00038486-exon-sc0001862-1491911889:35879..35994Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:30792..30870TCONS_00038486-exon-sc0001862-1491911889:30792..30870Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:30435..30542TCONS_00038486-exon-sc0001862-1491911889:30435..30542Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:29152..29455TCONS_00038486-exon-sc0001862-1491911889:29152..29455Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:28592..28794TCONS_00038486-exon-sc0001862-1491911889:28592..28794Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:28198..28363TCONS_00038486-exon-sc0001862-1491911889:28198..28363Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:27678..27826TCONS_00038486-exon-sc0001862-1491911889:27678..27826Clytia hemisphaericaexon
TCONS_00038486-exon-sc0001862-1491911889:27201..27254TCONS_00038486-exon-sc0001862-1491911889:27201..27254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001862supercontigsc0001862:27201..35994 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.5839	4.66781	2.14612	0.190606	11.0663	4.60331	11.985	11.7719	0	0.919848	0	4.11508e-07	0	3.87383	3.38343	9.3013	0	5.71905	3.93463	2.05318	14.0472	16.416	10.037	15.9613	2.1616	6.42344	7.51	2.28983	9.31743	6.67453
Blast
[Close]
BLAST of TCONS_00038486 vs. Swiss-Prot (Human)
Match: CSDE1 (Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 5.650e-47
Identity = 93/221 (42.08%), Postives = 136/221 (61.54%), Query Frame = 1 
Query:  481 KEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTDPRNNKPIAIKLNKLPAGSVVVETLSEESCIGRI------EMEAK-PQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNLQDR 1122
            +E G++EKLL SYGF++C+    R+FFH S++ G+   L+VGD ++F +++D R  KPIA+KL K+       E L EE   G++       +E+K P   G  +S  G V Y+++GE F+L ++  DV     +  GD + F I  NK TG++ AR I      K+    QG+V ++KEA+GFIER DVV EIFFHYSE+  D+  L  GDDV+F ++DR
Sbjct:   25 RETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ-----EILPEERMNGQVVCAVPHNLESKSPAAPG--QSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLL--KKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDR 236

HSP 2 Score: 129.028 bits (323), Expect = 5.120e-32
Identity = 76/223 (34.08%), Postives = 120/223 (53.81%), Query Frame = 1 
Query:  481 KEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTD----PRNNKPIAIKLNKLPAGSVVVETLSEESCIGRIEMEA--------KPQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNL 1113
            +E G++  + + +GF++C     R+FFH+SE   D N L + D ++F +  D     RN+   AI++ KLP G+V   + S+   +G +E EA         P +  E E+  G ++YD  G    + F   DV    +   GD VEF I+  +R G   A  +R        K + G V++LK+ +GFIE A+   EIFFHYSE+S D++ L +GD V+++L
Sbjct:  348 REMGVIAAMRDGFGFIKCVDRDVRMFFHFSEIL-DGNQLHIADEVEFTVVPDMLSAQRNH---AIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSL 566

HSP 3 Score: 103.99 bits (258), Expect = 6.657e-24
Identity = 70/221 (31.67%), Postives = 119/221 (53.85%), Query Frame = 1 
Query:  487 KGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTDPRNNKPIAIKLNKLPAGSVVVETLSEESCIGRIE--MEAKPQRNGEAESTLGRVSYDKSGEFFF---LPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKI-------RYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNL 1113
            +G+V  +  ++GF+E       +FFHYSEF+GD   LQ GD ++F  T   RN K +A  +  LP G+V+ E +S E   G +   +   P +N + +   GR+  D    F     LPF   D     T+ +GD V F I+T++R    +A  I       ++++ A+++    G+++++++ +GFI+  D    +FFH+SE   D N+L I D+V+F +
Sbjct:  187 QGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEF--TIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKN-QNDPLPGRIKVD----FVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREM----GVIAAMRDGFGFIKCVDRDVRMFFHFSEI-LDGNQLHIADEVEFTV 395
The following BLAST results are available for this feature:
BLAST of TCONS_00038486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSDE15.650e-4742.08Cold shock domain-containing protein E1 OS=Homo sa... [more]
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