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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038484 ID=TCONS_00038484|Name=TCONS_00038484|organism=Clytia hemisphaerica|type=transcript|length=497bp
CAACAGTTGGTCTACAGATTTGGTATCACTGCCATCATGGAGAAAAAAGA
AGCTATTCAAGTTGGTGATAAGGTGTCTTTCCAAATTTGCATCGATGCCG
TGACGAAGAAAAAACGAGCATGCAACGTCGCTTGTAAACGAAGTCTACTC
AGAGGAAAAGTCGAGTCCGTCAAAGGGCAGTTTGGTTTCATCGCGTACAA
CCATGACGACGGAAAAAGCGTATTTTTCCACATGTCTGAGGTTCAAAATG
AAAACGGCAAAGAGttaaagCAAGGTGACGAAGTTTCTTTCATGTTGGTG
CAGAATCACAAGAATGCAAAGAAGAGCGCCATACGTGTTCAGAAAATCAT
GTAAGATTCATAGATGTCCAGTGAAAGAGAATTATATTAAGATTTTAAAT
CATTTCaacaataggccatttcacggtcgaaatggatcatgggtaatcag
gactgattgcgcctccattacggcttcccgttggctagacgcaaaaa Run BLAST on NCBI transcript from alignment at sc0001862:21557..23158- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038484 ID=TCONS_00038484|Name=TCONS_00038484|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at sc0001862:21557..23158- (Clytia hemisphaerica)
CAACAGTTGGTCTACAGATTTGGTATCACTGCCATCATGGAGAAAAAAGA
AGCTATTCAAGTTGGTGATAAGGTACATCCGAAAAGGAAAACGTACTTGG
TAAAGCGAGCTCACTGCTCTGGTGGAACAACCCTCCCACCATTATTTTTC
TAACCCTATAGTAACTTTAGTTTCGCCGCACTTCTACGCTTTTATTGTTT
TTATTCCACAAGATTCTTATTGTTCAAAACGATTGCAGATTTTTGTATCT
AATCAACAGGAAATCGTTATTTGCGTGCATCTGGTCATAATCATCCCCTA
TGTGAAATGACTTTTTGTGACTGTTTGTGACAAATACTCACGGTAGCTAT
CTTTCTCTACTGTAGATAATCTTTTCAACTGGAACTTTGATAATAACGAG
CTCTTTATTTCTTCTTCTGACAGGTGTCTTTCCAAATTTGCATCGATGCC
GTGACGAAGAAAAAACGAGCATGCAACGTCGCTTGTAAACGAAGTCTACT
CAGAGGAAAAGTCGAGTCCGTCAAAGGGCAGGTCAGTTTGCATAAATGAT
GCATCAGTGAACATTTTTTTATCTACACGATCTCTACTTTTATTTGTACA
ACACATCATACATCCTGAGCACACCTCCCTCTTATATAAAGGGATAAGGA
TAATGGATATTTTCTTACGGAGCCATGGCCTTTAGATTGCATTTGTCCCA
GCGCAAAGTAATCTGAATCTGCTGTTTTGGTTTTACAGGGTTTTTCAGAT
ATTGGACCAGTTAATAAATAACTTGAATTTCATTATAGCTGTTATCAAAT
GTGTCAGATTGTACTCTGCACCCGATTTTATCCCACGTTCGATCTCCATT
CTAGACGGATCTTAGAAACACTTAACCTATAATCCTAAAACCCATTCCCG
TTCGAGATTATATTTTGAACAAAAGGCGACTGTCTGATGACAATATCATT
TTTTCTTGTTGTTTACAGTTTGGTTTCATCGCGTACAACCATGACGACGG
AAAAAGCGTATTTTTCCACATGTCTGAGGTTCAAAATGAAAACGGCAAAG
AGTTAAAGGTAAAAAAAATTTTCGAATTGTACGCTACAAAAGTGCAGGGC
TCGTGAAGATTCACAAATGATTTTACATCTTTATTGTACTATTGTACTTT
ATTGTCGATCTGGTAGTTGAGAGGTCAGAGTTTCACCTCTTGAAAATTTT
CGTTTAGTTCAGCTCTTCCCAGATTGATTTCCTACCATATATAATTATTT
TTATTTGATCGGCAAAAAGGTAGGTTTACCTACTTTTATGATAACGTTGA
TCCATGCTCCTCGATAGCTAGAGTTCTTTCAAAGCTCCTCGATTTTTTAT
TATTTATCATTGATTTCGTTGACAGCAAGGTGACGAAGTTTCTTTCATGT
TGGTGCAGAATCACAAGAATGCAAAGAAGAGCGCCATACGTGTTCAGAAA
ATCATGTAAGATTCATAGATGTCCAGTGAAAGAGAATTATATTAAGATTT
TAAATCATTTCAACAATAGGCCATTTCACGGTCGAAATGGATCATGGGTA
ATCAGGACTGATTGCGCCTCCATTACGGCTTCCCGTTGGCTAGACGCAAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038484-exon-sc0001862-1575043694:23087..23158 | TCONS_00038484-exon-sc0001862-1575043694:23087..23158 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1575043694:22628..22735 | TCONS_00038484-exon-sc0001862-1575043694:22628..22735 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1575043694:22101..22190 | TCONS_00038484-exon-sc0001862-1575043694:22101..22190 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1575043694:21557..21783 | TCONS_00038484-exon-sc0001862-1575043694:21557..21783 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1510915933:23087..23158 | TCONS_00038484-exon-sc0001862-1510915933:23087..23158 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1510915933:22628..22735 | TCONS_00038484-exon-sc0001862-1510915933:22628..22735 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1510915933:22101..22190 | TCONS_00038484-exon-sc0001862-1510915933:22101..22190 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1510915933:21557..21783 | TCONS_00038484-exon-sc0001862-1510915933:21557..21783 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1491911889:23087..23158 | TCONS_00038484-exon-sc0001862-1491911889:23087..23158 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1491911889:22628..22735 | TCONS_00038484-exon-sc0001862-1491911889:22628..22735 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1491911889:22101..22190 | TCONS_00038484-exon-sc0001862-1491911889:22101..22190 | Clytia hemisphaerica | exon |
| TCONS_00038484-exon-sc0001862-1491911889:21557..21783 | TCONS_00038484-exon-sc0001862-1491911889:21557..21783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001862 | supercontig | sc0001862:21557..23158 - |
Blast
BLAST of TCONS_00038484 vs. Swiss-Prot (Human)
Match: CSDE1 (Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 4.930e-19 Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 10 VYRFGITAIMEKKEAIQVGDKVSFQICIDAVTKKKRACNVACKRSLLRGKVESVKGQFGFIAYNHDDGKSVFFHMSEVQNENGKELKQGDEVSFMLVQNHKNAKKSAIRVQKI 348
VY FGI + K + +Q G+ V FQ+C+ + A N+ L R VE VK QFGFI Y D K +FFH+ EVQ +G EL+ GDEV F ++ N + K SA V ++
Sbjct: 631 VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNIT---PLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ--DGIELQAGDEVEFSVILNQRTGKCSACNVWRV 738
The following BLAST results are available for this feature:
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