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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038468 ID=TCONS_00038468|Name=TCONS_00038468|organism=Clytia hemisphaerica|type=transcript|length=1660bp
ATTGGATTCAGATTTGTTTGTGAATCTACTGCCAGTCAGTGTGATCTTCC
ATCCATCACGACAGCAACCAGGTTTCGAGCCTTCACATTGGCATTGCTTC
TGCAGGAGCCAGTAACCGACGCCTTTCTTCGACCAATCAGTAGCTAAACA
TGTTGGCTTGTCNGTGAGTCATTGATGCATTTGGTCTTGTCTGGGACGTT
CGAGACTATTTCATCCAGTCTTCTGGTATATCCGTCACCAGAAGCGATGT
AGCCTTGGGGTGCAACCTCTGTATCTCCCCCAGGGGGTGATGAAGGTGGT
CAGATGACGATCGTCTGGTTCAAGTGGGATGCTGTGGTAGCCATTCCAGC
AATCAAAGAGAGTCTTCTTCTTTCCGGAGGGAACTAGGCAGGCCTGGTGA
AATGGTGACATTGTGTGATGGGTCTCCCTGGTGGCATTTGCATTAAGCGC
CTGGAAGTCAACGGTTCTCCGNCCCTTATGAAAGGTGTGTTTGGACGAAG
GAGGTGTCTGAATGGTTGGAGTATTTCAGCGAATGGGAAGGCATAAGACA
CTTGATTGATCAAGCCAAACCATGATCGGATATCGTGGGTGTTGCGAGGG
GTCGGGAAGTCCTCAATTGCTTCGAAGAATCTTCTACACGGTTTGACGTT
GTCCAGAGTTATTTCAAAGCCAGCAAACGTGNAATTCCCCGACTGGGACA
GGCTCTATTACCCTCAGCCTTCTATCTTGGTCCAATCCAGCTTTGACGTC
TTCTTGCCAATGCAAAGGGACAGGCACAGGAGTGTGGTATGCTTTTGGTG
TTGCAGACGGATTGATCATCAGGTGAAGTGGCTTGGTGTCTACCATTGGA
AGGGGTTGATGGCTGCATGTGTTAAAGGTGCTGGAGCGATAGTAGCTGAT
GAGCCAGTCTTGTAGCTTGGACCTGTTTTCTTCAGTTGCTGGGAAGGGAA
GTTTCGTAGGTTTTGCTTGTTGCAGCTCACTCTTTGGACAGTCGCAGTTT
GATGTTAGTGCACTCTTTGGTGGTCGGGATGATGTGATGGATTCTTCTGA
AGTAGGATCAGGTGAGCTTGTCTGTCCTTCATCTTCTACCTCTTGGATTG
CCTGTTGGCCGCCTTGATTTTCATTGTTGCTGGTATCAGGTCTTCTTCTC
CAAGGCCAAGTCTTTGCAGGTGTTTGATGCTAATGACACAACTCTGGCAT
CCTGTATCAGCCATTGCTTCAAATGTTGATGATGTGTGCTTTTCCTCATC
TAGATGGTACCCAAGTCTTGAGTAATCTTCAGCTGCCACCGAGACAGAGA
GCTTGATGTATGTCTGTGGCTGGGGATCTCTCTTGATCCATCTGTCTGTG
TATAAGTGGTGGTCGAGAGCAGTGGATGATGAAAGAGCGTTGTTTGTGTT
GGAGGTTGTAGAACAAAGGAAAAATTCCAATGCTGATACTTCAGTGGTTG
CCTTGTTCTTCTGTCTACAAACCACTGCCAAGTGATGGCTTTTCTGGCAG
TAATCACATGGTTTGTTGAAGGCTGGACACTTCATCTTTCTGATGGCTGA
TGATGAGTTCTTTCCGTGACCCTTCTTGCCGCAGTAGTTACAGGACCCTT
CTTTGACCTGCTCTCGCTGGTTTCTTTTGTATTGGCTGATTCCAGCTGCT
TGGGAGTCAT Run BLAST on NCBI protein sequence of TCONS_00038468-protein >TCONS_00038468-protein ID=TCONS_00038468-protein|Name=TCONS_00038468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
DSQAAGISQYKRNQREQVKEGSCNYCGKKGHGKNSSSAIRKMKCPAFNKP
CDYCQKSHHLAVVCRQKNKATTEVSALEFFLCSTTSNTNNALSSSTALDH
HLYTDRWIKRDPQPQTYIKLSVSVAAEDYSRLGYHLDEEKHTSSTFEAMA
DTGCQSCVISIKHLQRLGLGEEDLIPATMKIKAANRQSKR Run BLAST on NCBI transcript from alignment at sc0001858:33163..34822 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038468 ID=TCONS_00038468|Name=TCONS_00038468|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at sc0001858:33163..34822 (Clytia hemisphaerica)
ATGACTCCCAAGCAGCTGGAATCAGCCAATACAAAAGAAACCAGCGAGAG
CAGGTCAAAGAAGGGTCCTGTAACTACTGCGGCAAGAAGGGTCACGGAAA
GAACTCATCATCAGCCATCAGAAAGATGAAGTGTCCAGCCTTCAACAAAC
CATGTGATTACTGCCAGAAAAGCCATCACTTGGCAGTGGTTTGTAGACAG
AAGAACAAGGCAACCACTGAAGTATCAGCATTGGAATTTTTCCTTTGTTC
TACAACCTCCAACACAAACAACGCTCTTTCATCATCCACTGCTCTCGACC
ACCACTTATACACAGACAGATGGATCAAGAGAGATCCCCAGCCACAGACA
TACATCAAGCTCTCTGTCTCGGTGGCAGCTGAAGATTACTCAAGACTTGG
GTACCATCTAGATGAGGAAAAGCACACATCATCAACATTTGAAGCAATGG
CTGATACAGGATGCCAGAGTTGTGTCATTAGCATCAAACACCTGCAAAGA
CTTGGCCTTGGAGAAGAAGACCTGATACCAGCAACAATGAAAATCAAGGC
GGCCAACAGGCAATCCAAGAGGTAGAAGATGAAGGACAGACAAGCTCACC
TGATCCTACTTCAGAAGAATCCATCACATCATCCCGACCACCAAAGAGTG
CACTAACATCAAACTGCGACTGTCCAAAGAGTGAGCTGCAACAAGCAAAA
CCTACGAAACTTCCCTTCCCAGCAACTGAAGAAAACAGGTCCAAGCTACA
AGACTGGCTCATCAGCTACTATCGCTCCAGCACCTTTAACACATGCAGCC
ATCAACCCCTTCCAATGGTAGACACCAAGCCACTTCACCTGATGATCAAT
CCGTCTGCAACACCAAAAGCATACCACACTCCTGTGCCTGTCCCTTTGCA
TTGGCAAGAAGACGTCAAAGCTGGATTGGACCAAGATAGAAGGCTGAGGG
TAATAGAGCCTGTCCCAGTCGGGGAATTNCACGTTTGCTGGCTTTGAAAT
AACTCTGGACAACGTCAAACCGTGTAGAAGATTCTTCGAAGCAATTGAGG
ACTTCCCGACCCCTCGCAACACCCACGATATCCGATCATGGTTTGGCTTG
ATCAATCAAGTGTCTTATGCCTTCCCATTCGCTGAAATACTCCAACCATT
CAGACACCTCCTTCGTCCAAACACACCTTTCATAAGGGNCGGAGAACCGT
TGACTTCCAGGCGCTTAATGCAAATGCCACCAGGGAGACCCATCACACAA
TGTCACCATTTCACCAGGCCTGCCTAGTTCCCTCCGGAAAGAAGAAGACT
CTCTTTGATTGCTGGAATGGCTACCACAGCATCCCACTTGAACCAGACGA
TCGTCATCTGACCACCTTCATCACCCCCTGGGGGAGATACAGAGGTTGCA
CCCCAAGGCTACATCGCTTCTGGTGACGGATATACCAGAAGACTGGATGA
AATAGTCTCGAACGTCCCAGACAAGACCAAATGCATCAATGACTCACNGA
CAAGCCAACATGTTTAGCTACTGATTGGTCGAAGAAAGGCGTCGGTTACT
GGCTCCTGCAGAAGCAATGCCAATGTGAAGGCTCGAAACCTGGTTGCTGT
CGTGATGGATGGAAGATCACACTGACTGGCAGTAGATTCACAAACAAATC
TGAATCCAAT Coding sequence (CDS) from alignment at sc0001858:33163..34822 >TCONS_00038468 ID=TCONS_00038468|Name=TCONS_00038468|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0001858:33163..34822 (Clytia hemisphaerica)
GACTCCCAAGCAGCTGGAATCAGCCAATACAAAAGAAACCAGCGAGAGCA
GGTCAAAGAAGGGTCCTGTAACTACTGCGGCAAGAAGGGTCACGGAAAGA
ACTCATCATCAGCCATCAGAAAGATGAAGTGTCCAGCCTTCAACAAACCA
TGTGATTACTGCCAGAAAAGCCATCACTTGGCAGTGGTTTGTAGACAGAA
GAACAAGGCAACCACTGAAGTATCAGCATTGGAATTTTTCCTTTGTTCTA
CAACCTCCAACACAAACAACGCTCTTTCATCATCCACTGCTCTCGACCAC
CACTTATACACAGACAGATGGATCAAGAGAGATCCCCAGCCACAGACATA
CATCAAGCTCTCTGTCTCGGTGGCAGCTGAAGATTACTCAAGACTTGGGT
ACCATCTAGATGAGGAAAAGCACACATCATCAACATTTGAAGCAATGGCT
GATACAGGATGCCAGAGTTGTGTCATTAGCATCAAACACCTGCAAAGACT
TGGCCTTGGAGAAGAAGACCTGATACCAGCAACAATGAAAATCAAGGCGG
CCAACAGGCAATCCAAGAGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038468-exon-sc0001858-1491911889:33163..34822 | TCONS_00038468-exon-sc0001858-1491911889:33163..34822 | Clytia hemisphaerica | exon |
| TCONS_00038468-exon-sc0001858-1510915933:33163..34822 | TCONS_00038468-exon-sc0001858-1510915933:33163..34822 | Clytia hemisphaerica | exon |
| TCONS_00038468-exon-sc0001858-1575043694:33163..34822 | TCONS_00038468-exon-sc0001858-1575043694:33163..34822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001858 | supercontig | sc0001858:33163..34822 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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