TCONS_00038467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038467
Unique NameTCONS_00038467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038467 ID=TCONS_00038467|Name=TCONS_00038467|organism=Clytia hemisphaerica|type=transcript|length=313bp
NNAGttgaagtattttttaaagaaattgtttTAGATGGTCCACTTGGCAA
AACAACTTATTATGCTATTCgggttgaatttcaagtacgtGGAAGCCCtc
atattcattattttctttgGATTTTGAATGCGCCAACATTAACTccggaa
acaaaatttgaatacGTAGAATttgttgataaaataattaaagTTTGTTT
ACCATCACAACAAGAAGATCCGGAATTGTTTAACCTTGTAAAAACCTATC
AATTACATCGTCATTCGAAAACTTgtcgtaaatataaaaatacgcCTTGT
AGATTTCATTTCG
Run BLAST on NCBI

protein sequence of TCONS_00038467-protein

>TCONS_00038467-protein ID=TCONS_00038467-protein|Name=TCONS_00038467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
XVEVFFKEIVLDGPLGKTTYYAIRVEFQVRGSPHIHYFLWILNAPTLTPE
TKFEYVEFVDKIIKVCLPSQQEDPELFNLVKTYQLHRHSKTCRKYKNTPC
RFHF
Run BLAST on NCBI

transcript from alignment at sc0001858:7964..8276

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038467 ID=TCONS_00038467|Name=TCONS_00038467|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0001858:7964..8276 (Clytia hemisphaerica)
CGAAATGAAATCTACAAGgcgtatttttatatttacgacAAGTTTTCGAA
TGACGATGTAATTGATAGGTTTTTACAAGGTTAAACAATTCCGGATCTTC
TTGTTGTGATGGTAAACAAActttaattattttatcaacaaATTCTACgt
attcaaattttgtttccggAGTTAATGTTGGCGCATTCAAAATCcaaaga
aaataatgaatatgaGGGCTTCCacgtacttgaaattcaacccGAATAGC
ATAATAAGTTGTTTTGCCAAGTGGACCATCTAaaacaatttctttaaaaa
atacttcaaCTNN

Coding sequence (CDS) from alignment at sc0001858:7964..8276

>TCONS_00038467 ID=TCONS_00038467|Name=TCONS_00038467|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0001858:7964..8276 (Clytia hemisphaerica)
GAAATGAAATCTACAAGgcgtatttttatatttacgacAAGTTTTCGAAT
GACGATGTAATTGATAGGTTTTTACAAGGTTAAACAATTCCGGATCTTCT
TGTTGTGATGGTAAACAAActttaattattttatcaacaaATTCTACgta
ttcaaattttgtttccggAGTTAATGTTGGCGCATTCAAAATCcaaagaa
aataatgaatatgaGGGCTTCCacgtacttgaaattcaacccGAATAGCA
TAATAAGTTGTTTTGCCAAGTGGACCATCTAaaacaatttctttaaaaaa
tacttcaaCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023056XLOC_023056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038467-exon-sc0001858-1491911889:7964..8276TCONS_00038467-exon-sc0001858-1491911889:7964..8276Clytia hemisphaericaexon
TCONS_00038467-exon-sc0001858-1510915933:7964..8276TCONS_00038467-exon-sc0001858-1510915933:7964..8276Clytia hemisphaericaexon
TCONS_00038467-exon-sc0001858-1575043694:7964..8276TCONS_00038467-exon-sc0001858-1575043694:7964..8276Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038467-proteinTCONS_00038467-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001858supercontigsc0001858:7964..8276 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27469	4.62804	3.06218	0.00359302	2.29949	1.09025	2.04298	0.949685	1.38996	0.938898	0	1.64001	1.21257	0.471085	0.834942	0.447949	0.25601	0.663937	0.472787	2.27612	3.43986	3.86164	0.704673	0.525463	0.732298	0.653558	3.40812	2.24758	1.867	1.99395
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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