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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038459 ID=TCONS_00038459|Name=TCONS_00038459|organism=Clytia hemisphaerica|type=transcript|length=2335bp
GAATGAATTTAAGAATTTGAGAGTATCCTTTCATATTTTGTTGATAATAA
TTTATACATTGAAATGTTGATATATTTAGATAAACAAACTCAGTAACTAA
AACCAATTATTTTTAGGGCAGcatatcaaaaatctttttatcgaattttg
aacaaatttttggaaaCAAACATACCTTGAAAATAAACTTCGAATTTGCT
GACTTGTTACATACTCGTCAGCGTGCAGTTTGGTTCTTAGCCTGTAATGG
GCTTGTTCTGGGCTCGTTTTTTTCCCAGTTTCCTCACCTTCCAAAAATAT
ATCCATTAGTAGCTTCTTCTGCTTGATGGAATATCGAAAGGCTCTTCTCT
TTGGAAGTGCCCATCCACAGATACTTGTGAAGTATGTGTCATCCTGTTGA
GAAACACAGGATATTGATCCATTTACTTCTGAACAAACAATGTTTGGTGT
TTTCATCTTACTAACATATAATGATTTTGCTCTATCTGTTAGTGACTTGA
AACAGTTTGAATCACGTGTGGTCTTCAGATAAAACGTGCGCCTCAAAAGA
TGCCTCGTCTAAAAAGGATTCCGTGCAGCCAATGGTTGGGCAAAATTTGA
GTGTGTTTACCATTCTATCAGAACGTGGTTTctttgaagatgaagatgag
ggATTGGTTTGCCATTTGCTTGTTGTGTGGTAATCATTAAGGACCTTTAT
AGCAGGATGAAATTTTGTGTCGGTGTACTTCCACTTCTTTCCTTTGCCAA
CTCCAAAGTAACGCCACATCAGCATGTGATCAGAGAAGAAACGAAAGGAA
TGATAGTAACTGATGTTTGGTATTGGTGTTGATCCATGTAACTTTGATGC
TTTGGAATCGATTTCGACAACTGCAACATCAGCATTCTGGATGCCTTTTC
CATGGTGAAGTCCGTAATAGATATCCTCAGCTGATTGGATATCGCTGCCA
GCATccacaaagcttctcaaaacaCTCTTGGCTCCAGCAGATTCACGATC
ACACTTGTCTTCCTCGGGAAGGTTCATTGTAGTCGTAACGCTGCAATGAG
ATATCTTTGTCCTTACACAATTTATAAAGAGACTCTAAATAGTAATTCCC
ATGATATGAAGGTGCATTGTCTGATTTGGCATAAAGTTGAGACATATTTG
GAAAGTCCTTCTTTGCCTTTTCCAAAACTACATCAGCTAGACAAAGTGAG
TCAACTAGGGCTTGTTCACAGCGATAGGCTGCTGTAAAATAAACCTTCTT
TATTAAATTTTCTTCTCTATctttaaagaagaaaacatcAACATGAAGAG
TCATACCCTTCTTGCCAAAGTATTCTTTCTGGCCTTCTCTGAAACGAGCT
GGTAaaattttttggcaaaagtcTTTCAGCCCAAACCTTGTTTCAGGTGA
CAATTGGTCAAACGCCATTATCTTTGCTAATTTTTGCTGAGCATCTCTAA
TTTGATGTTTCATGTATGCTTCAATATCTGCAATAGCAACATTGGTGTCA
TATTGGAGGTCTCCATCATCAGTTTCTTTGACAAGGTCCCGAATTTGGTT
CAAAACTAAGTGAAGTTCAGTGCAATCAGCACATTCCTCTTTACTGATTT
CTGCAGATGTGCTCAAATCAGGATCATCTTTGTAACTTAAAGCAAAGCAA
GTTGAGTGAGAAGAAAGCGTTGAAGTTTCTGAACATTTGACAGGATAATT
TGATTTGAGATATCTCTTTcctttttcaagtgatttacgaacatcatttt
gcttcattttctcAGCAATATCGGTCAGGACTTTGAAACCATTCATTTCA
GCAGCAGTAACATCATCTAGTCCAGCTAAAGCTTTTCTTTGTGAAGGATT
GATTCCATATGTAACACTCTCCACAAAGACGAGTCAGAAATAGGTGAATA
TCCAGTTTCTTTACACATCTCCTTGTAAAATTGAATAGTATGGCTATACT
TCATCGTTAAGATAGAATTAGCAACTTTCTGCACATTCCCATTGTCAAAC
TTAATTTTGTTTATGCCATAGGCAACGTCCTGAAGGAGTCCTTTAGTGAA
AAGAAAGTCTAAAAAGTGTTCAATTTTATCCTGGGGAATACGTGAACGAG
TCATTTTCTCAGCTTTAGATGGCAGTTTTAAACCGGTGTTCTCATTTTTC
AGTTTTCGTGCTTGATCTATTTGATGCTTTTTACAACCAAAATACTTGTT
CAATTCATCTTTGGTATACTTATCATGGTTAACAACAGATAGTATTATTA
TCTGTTCAAATGAATCACTTTCCCTGAACAAGTTTACCAAAACAGTCTAA
TCTTCCGAAACAGATTCGCTATTCTCACTTTTATC Run BLAST on NCBI protein sequence of TCONS_00038459-protein >TCONS_00038459-protein ID=TCONS_00038459-protein|Name=TCONS_00038459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MNGFKVLTDIAEKMKQNDVRKSLEKGKRYLKSNYPVKCSETSTLSSHSTC
FALSYKDDPDLSTSAEISKEECADCTELHLVLNQIRDLVKETDDGDLQYD
TNVAIADIEAYMKHQIRDAQQKLAKIMAFDQLSPETRFGLKDFCQKILPA
RFREGQKEYFGKKGMTLHVDVFFFKDREENLIKKVYFTAAYRCEQALVDS
LCLADVVLEKAKKDFPNMSQLYAKSDNAPSYHGNYYLESLYKLCKDKDIS
LQRYDYNEPSRGRQV Run BLAST on NCBI transcript from alignment at sc0001857:8981..11315 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038459 ID=TCONS_00038459|Name=TCONS_00038459|organism=Clytia hemisphaerica|type=transcript|length=2335bp|location=Sequence derived from alignment at sc0001857:8981..11315 (Clytia hemisphaerica)
GATAAAAGTGAGAATAGCGAATCTGTTTCGGAAGATTAGACTGTTTTGGT
AAACTTGTTCAGGGAAAGTGATTCATTTGAACAGATAATAATACTATCTG
TTGTTAACCATGATAAGTATACCAAAGATGAATTGAACAAGTATTTTGGT
TGTAAAAAGCATCAAATAGATCAAGCACGAAAACTGAAAAATGAGAACAC
CGGTTTAAAACTGCCATCTAAAGCTGAGAAAATGACTCGTTCACGTATTC
CCCAGGATAAAATTGAACACTTTTTAGACTTTCTTTTCACTAAAGGACTC
CTTCAGGACGTTGCCTATGGCATAAACAAAATTAAGTTTGACAATGGGAA
TGTGCAGAAAGTTGCTAATTCTATCTTAACGATGAAGTATAGCCATACTA
TTCAATTTTACAAGGAGATGTGTAAAGAAACTGGATATTCACCTATTTCT
GACTCGTCTTTGTGGAGAGTGTTACATATGGAATCAATCCTTCACAAAGA
AAAGCTTTAGCTGGACTAGATGATGTTACTGCTGCTGAAATGAATGGTTT
CAAAGTCCTGACCGATATTGCTgagaaaatgaagcaaaatgatgttcgta
aatcacttgaaaaaggAAAGAGATATCTCAAATCAAATTATCCTGTCAAA
TGTTCAGAAACTTCAACGCTTTCTTCTCACTCAACTTGCTTTGCTTTAAG
TTACAAAGATGATCCTGATTTGAGCACATCTGCAGAAATCAGTAAAGAGG
AATGTGCTGATTGCACTGAACTTCACTTAGTTTTGAACCAAATTCGGGAC
CTTGTCAAAGAAACTGATGATGGAGACCTCCAATATGACACCAATGTTGC
TATTGCAGATATTGAAGCATACATGAAACATCAAATTAGAGATGCTCAGC
AAAAATTAGCAAAGATAATGGCGTTTGACCAATTGTCACCTGAAACAAGG
TTTGGGCTGAAAgacttttgccaaaaaatttTACCAGCTCGTTTCAGAGA
AGGCCAGAAAGAATACTTTGGCAAGAAGGGTATGACTCTTCATGTTgatg
ttttcttctttaaagATAGAGAAGAAAATTTAATAAAGAAGGTTTATTTT
ACAGCAGCCTATCGCTGTGAACAAGCCCTAGTTGACTCACTTTGTCTAGC
TGATGTAGTTTTGGAAAAGGCAAAGAAGGACTTTCCAAATATGTCTCAAC
TTTATGCCAAATCAGACAATGCACCTTCATATCATGGGAATTACTATTTA
GAGTCTCTTTATAAATTGTGTAAGGACAAAGATATCTCATTGCAGCGTTA
CGACTACAATGAACCTTCCCGAGGAAGACAAGTGTGATCGTGAATCTGCT
GGAGCCAAGAGtgttttgagaagctttgtggATGCTGGCAGCGATATCCA
ATCAGCTGAGGATATCTATTACGGACTTCACCATGGAAAAGGCATCCAGA
ATGCTGATGTTGCAGTTGTCGAAATCGATTCCAAAGCATCAAAGTTACAT
GGATCAACACCAATACCAAACATCAGTTACTATCATTCCTTTCGTTTCTT
CTCTGATCACATGCTGATGTGGCGTTACTTTGGAGTTGGCAAAGGAAAGA
AGTGGAAGTACACCGACACAAAATTTCATCCTGCTATAAAGGTCCTTAAT
GATTACCACACAACAAGCAAATGGCAAACCAATccctcatcttcatcttc
aaagAAACCACGTTCTGATAGAATGGTAAACACACTCAAATTTTGCCCAA
CCATTGGCTGCACGGAATCCTTTTTAGACGAGGCATCTTTTGAGGCGCAC
GTTTTATCTGAAGACCACACGTGATTCAAACTGTTTCAAGTCACTAACAG
ATAGAGCAAAATCATTATATGTTAGTAAGATGAAAACACCAAACATTGTT
TGTTCAGAAGTAAATGGATCAATATCCTGTGTTTCTCAACAGGATGACAC
ATACTTCACAAGTATCTGTGGATGGGCACTTCCAAAGAGAAGAGCCTTTC
GATATTCCATCAAGCAGAAGAAGCTACTAATGGATATATTTTTGGAAGGT
GAGGAAACTGGGAAAAAAACGAGCCCAGAACAAGCCCATTACAGGCTAAG
AACCAAACTGCACGCTGACGAGTATGTAACAAGTCAGCAAATTCGAAGTT
TATTTTCAAGGTATGTTTGtttccaaaaatttgttcaaaattcgataaaa
agatttttgatatgCTGCCCTAAAAATAATTGGTTTTAGTTACTGAGTTT
GTTTATCTAAATATATCAACATTTCAATGTATAAATTATTATCAACAAAA
TATGAAAGGATACTCTCAAATTCTTAAATTCATTC Coding sequence (CDS) from alignment at sc0001857:8981..11315 >TCONS_00038459 ID=TCONS_00038459|Name=TCONS_00038459|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0001857:8981..11315 (Clytia hemisphaerica)
ATGAATGGTTTCAAAGTCCTGACCGATATTGCTgagaaaatgaagcaaaa
tgatgttcgtaaatcacttgaaaaaggAAAGAGATATCTCAAATCAAATT
ATCCTGTCAAATGTTCAGAAACTTCAACGCTTTCTTCTCACTCAACTTGC
TTTGCTTTAAGTTACAAAGATGATCCTGATTTGAGCACATCTGCAGAAAT
CAGTAAAGAGGAATGTGCTGATTGCACTGAACTTCACTTAGTTTTGAACC
AAATTCGGGACCTTGTCAAAGAAACTGATGATGGAGACCTCCAATATGAC
ACCAATGTTGCTATTGCAGATATTGAAGCATACATGAAACATCAAATTAG
AGATGCTCAGCAAAAATTAGCAAAGATAATGGCGTTTGACCAATTGTCAC
CTGAAACAAGGTTTGGGCTGAAAgacttttgccaaaaaatttTACCAGCT
CGTTTCAGAGAAGGCCAGAAAGAATACTTTGGCAAGAAGGGTATGACTCT
TCATGTTgatgttttcttctttaaagATAGAGAAGAAAATTTAATAAAGA
AGGTTTATTTTACAGCAGCCTATCGCTGTGAACAAGCCCTAGTTGACTCA
CTTTGTCTAGCTGATGTAGTTTTGGAAAAGGCAAAGAAGGACTTTCCAAA
TATGTCTCAACTTTATGCCAAATCAGACAATGCACCTTCATATCATGGGA
ATTACTATTTAGAGTCTCTTTATAAATTGTGTAAGGACAAAGATATCTCA
TTGCAGCGTTACGACTACAATGAACCTTCCCGAGGAAGACAAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038459-exon-sc0001857-1491911889:8981..11315 | TCONS_00038459-exon-sc0001857-1491911889:8981..11315 | Clytia hemisphaerica | exon |
| TCONS_00038459-exon-sc0001857-1510915933:8981..11315 | TCONS_00038459-exon-sc0001857-1510915933:8981..11315 | Clytia hemisphaerica | exon |
| TCONS_00038459-exon-sc0001857-1575043694:8981..11315 | TCONS_00038459-exon-sc0001857-1575043694:8981..11315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001857 | supercontig | sc0001857:8981..11315 . |
Blast
The following BLAST results are available for this feature:
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