TCONS_00038458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038458
Unique NameTCONS_00038458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038458 ID=TCONS_00038458|Name=TCONS_00038458|organism=Clytia hemisphaerica|type=transcript|length=304bp
CTTGGGTTTTTGCTTAGTACTGTCTGATAATTCATTGACACGTGTTTCCT
TTATTGTGAATGGTAATGGGCTCATTATTGAAGCTTCACACAATGAAATG
GCACTGTTTGtagcattttcaatttcatctaCAGAAATAAATCGCTTTTC
TGGAACATATTCTTTATTGTCGTCTGGAGTACTGGAATTAAAAGGTAATA
GATTGTTCTCcttttcatcttcactttcaagattttcacttcTTTTTATG
GAAGTCATAATAATCGTATGCTTTGCACATACAGCTGCTCCTACTGGAAG
TGGA
Run BLAST on NCBI

protein sequence of TCONS_00038458-protein

>TCONS_00038458-protein ID=TCONS_00038458-protein|Name=TCONS_00038458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
PLPVGAAVCAKHTIIMTSIKRSENLESEDEKENNLLPFNSSTPDDNKEYV
PEKRFISVDEIENATNSAISLCEASIMSPLPFTIKETRVNELSDSTKQKP
K
Run BLAST on NCBI

transcript from alignment at sc0001857:8578..8881

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038458 ID=TCONS_00038458|Name=TCONS_00038458|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0001857:8578..8881 (Clytia hemisphaerica)
TCCACTTCCAGTAGGAGCAGCTGTATGTGCAAAGCATACGATTATTATGA
CTTCCATAAAAAgaagtgaaaatcttgaaagtgaagatgaaaagGAGAAC
AATCTATTACCTTTTAATTCCAGTACTCCAGACGACAATAAAGAATATGT
TCCAGAAAAGCGATTTATTTCTGtagatgaaattgaaaatgctaCAAACA
GTGCCATTTCATTGTGTGAAGCTTCAATAATGAGCCCATTACCATTCACA
ATAAAGGAAACACGTGTCAATGAATTATCAGACAGTACTAAGCAAAAACC
CAAG

Coding sequence (CDS) from alignment at sc0001857:8578..8881

>TCONS_00038458 ID=TCONS_00038458|Name=TCONS_00038458|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0001857:8578..8881 (Clytia hemisphaerica)
CCACTTCCAGTAGGAGCAGCTGTATGTGCAAAGCATACGATTATTATGAC
TTCCATAAAAAgaagtgaaaatcttgaaagtgaagatgaaaagGAGAACA
ATCTATTACCTTTTAATTCCAGTACTCCAGACGACAATAAAGAATATGTT
CCAGAAAAGCGATTTATTTCTGtagatgaaattgaaaatgctaCAAACAG
TGCCATTTCATTGTGTGAAGCTTCAATAATGAGCCCATTACCATTCACAA
TAAAGGAAACACGTGTCAATGAATTATCAGACAGTACTAAGCAAAAACCC
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023047XLOC_023047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038458-exon-sc0001857-1491911889:8578..8881TCONS_00038458-exon-sc0001857-1491911889:8578..8881Clytia hemisphaericaexon
TCONS_00038458-exon-sc0001857-1510915933:8578..8881TCONS_00038458-exon-sc0001857-1510915933:8578..8881Clytia hemisphaericaexon
TCONS_00038458-exon-sc0001857-1575043694:8578..8881TCONS_00038458-exon-sc0001857-1575043694:8578..8881Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038458-proteinTCONS_00038458-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001857supercontigsc0001857:8578..8881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.50952	1.19284	0.479705	2.24547	0.628843	0.778924	3.40219	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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