TCONS_00038457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038457
Unique NameTCONS_00038457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038457 ID=TCONS_00038457|Name=TCONS_00038457|organism=Clytia hemisphaerica|type=transcript|length=479bp
GNAGAATAACGTTTACTTTTAAAATTGGaggaatgaaaaataaaacaatt
accTTTAGTCACGGCGTAAATCAAATCTTGTGCGATGGACATCTTCAATC
TTTCAGCTTTTTCCGATAAGGTGCCATCTTTTCCTTTCAAAAGGGTCGAG
AGTAACAGATTCAGCATCGGTGGGATGACTACTTTATCTGGTGTTAAATC
TTGGGGCTGTGGTGGCCAAGGTATCGTGTCAGTTAAATTTCTGATTTCCT
TTCGAATAAAATCAAAGGTTTTGATAGCTTGTACCTCTTCATTTTTCCAT
TCATTCTTCAGTTGATCATTTTCCTCTTTAGCGTTGACATATTTCAAGAC
AATTTCATCGAGGGAAACAGATTGGTGATAAACATACGTTTCATTTCTTG
TTTTCAGAAATTTGAGGGATGGCATCTTCGTTTctaaacttcttttaaaa
ttcttttttgtggAAGCTTCCATGGTGAG
Run BLAST on NCBI

protein sequence of TCONS_00038457-protein

>TCONS_00038457-protein ID=TCONS_00038457-protein|Name=TCONS_00038457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
LTMEASTKKNFKRSLETKMPSLKFLKTRNETYVYHQSVSLDEIVLKYVNA
KEENDQLKNEWKNEEVQAIKTFDFIRKEIRNLTDTIPWPPQPQDLTPDKV
VIPPMLNLLLSTLLKGKDGTLSEKAERLKMSIAQDLIYAVTKGNCFIFHS
SNFKSKRYS
Run BLAST on NCBI

transcript from alignment at sc0001857:3996..4474

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038457 ID=TCONS_00038457|Name=TCONS_00038457|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at sc0001857:3996..4474 (Clytia hemisphaerica)
CTCACCATGGAAGCTTccacaaaaaagaattttaaaagaagtttagAAAC
GAAGATGCCATCCCTCAAATTTCTGAAAACAAGAAATGAAACGTATGTTT
ATCACCAATCTGTTTCCCTCGATGAAATTGTCTTGAAATATGTCAACGCT
AAAGAGGAAAATGATCAACTGAAGAATGAATGGAAAAATGAAGAGGTACA
AGCTATCAAAACCTTTGATTTTATTCGAAAGGAAATCAGAAATTTAACTG
ACACGATACCTTGGCCACCACAGCCCCAAGATTTAACACCAGATAAAGTA
GTCATCCCACCGATGCTGAATCTGTTACTCTCGACCCTTTTGAAAGGAAA
AGATGGCACCTTATCGGAAAAAGCTGAAAGATTGAAGATGTCCATCGCAC
AAGATTTGATTTACGCCGTGACTAAAggtaattgttttatttttcattcc
tCCAATTTTAAAAGTAAACGTTATTCTNC

Coding sequence (CDS) from alignment at sc0001857:3996..4474

>TCONS_00038457 ID=TCONS_00038457|Name=TCONS_00038457|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001857:3996..4474 (Clytia hemisphaerica)
CTCACCATGGAAGCTTccacaaaaaagaattttaaaagaagtttagAAAC
GAAGATGCCATCCCTCAAATTTCTGAAAACAAGAAATGAAACGTATGTTT
ATCACCAATCTGTTTCCCTCGATGAAATTGTCTTGAAATATGTCAACGCT
AAAGAGGAAAATGATCAACTGAAGAATGAATGGAAAAATGAAGAGGTACA
AGCTATCAAAACCTTTGATTTTATTCGAAAGGAAATCAGAAATTTAACTG
ACACGATACCTTGGCCACCACAGCCCCAAGATTTAACACCAGATAAAGTA
GTCATCCCACCGATGCTGAATCTGTTACTCTCGACCCTTTTGAAAGGAAA
AGATGGCACCTTATCGGAAAAAGCTGAAAGATTGAAGATGTCCATCGCAC
AAGATTTGATTTACGCCGTGACTAAAggtaattgttttatttttcattcc
tCCAATTTTAAAAGTAAACGTTATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023046XLOC_023046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038457-exon-sc0001857-1491911889:3996..4474TCONS_00038457-exon-sc0001857-1491911889:3996..4474Clytia hemisphaericaexon
TCONS_00038457-exon-sc0001857-1510915933:3996..4474TCONS_00038457-exon-sc0001857-1510915933:3996..4474Clytia hemisphaericaexon
TCONS_00038457-exon-sc0001857-1575043694:3996..4474TCONS_00038457-exon-sc0001857-1575043694:3996..4474Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038457-proteinTCONS_00038457-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001857supercontigsc0001857:3996..4474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.305731	0.118982	0	0.415995	3.27938	0.950896	0.52378	0	0.480423	0.431288	0.316302	0.767899	0.836257	0.18764	0	0.876677	0.801293	0.598382	0	0.347075	0.467788	0.288196	0	0.0373262	0.259389	1.36933	0.679859	0.192287	0.135425	0.150836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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