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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038456 ID=TCONS_00038456|Name=TCONS_00038456|organism=Clytia hemisphaerica|type=transcript|length=1498bp
GACTCAGATTATTCGAGTAGTTTTTATAAAACGTCACGATCGTCCAGTAT
GACGGATATGACGTCACCGACTAAATACCGACATCCGACGACAAGCACGA
CGTCAAATCACGATCCGTACGACGGCCAtaagaaaaacaacacaaaCGGT
GCAATATTAGACGATTTTATACTTGGTCCTCTCAACAAGTGGAAATGACT
CTACTCCGAACAATACAAACAATATTAGTAAACAAATACAAGACATTTTA
GACCCTGCTGGTAAATCAAGTGATTTCAGCGAAGAGGGCTACTCCGCGTC
AGAAGAGAGGACGTTTTTGATGATCACACGCGGCCACCCGCGCGTCGAAA
ATCACGTGGCGAGCGAAGTATGAATAGCTTTAAAAGGCAGTTAAGTGTGA
CCGGTTACGCAGCGCTTGAAGATAAAGATGGAAAACCGACGTCGTATTTA
TGAGCCCGACTTTTGTCGTTATAGTTGTTTAATGGAGGCAAACTGGAGAA
ACCAACGCCGTATCTATGATGACTATGCTCTGGTTTAGTCGGCCCACTTT
CGATCCACTTTATGCATACTTTAATtagcaattagaataggcagggctaA
AAGTGGGCCGACTAAACCAGAGCTATGAGCCCGACTTACGTCATTATAGT
TGTTTAATGGAGGTAAGCTAGAGGAATTGCCGTCACAATCAATCATTGAA
GATCTGGTGGAAATTAAATATCGCCGTCTAATATTCAAAAAATCGCGTCG
CCTGTACATactctttttatttttcgatcCATGCCAGTCAAATATGATAG
TTCCGTCGCGTCGATTTTATAATACGCTTCAGAGATCTCGAAAATATTGT
TCAATTGGTTAGTATGTTtgttaacttgaattttgattggAAGAATCTTT
TCAAGTACCCATTTTTGGATTCATATTACATGCACCACACATCATACGTA
TCATTTGGATTATTTCGCTTTCACGTTAACATTTTGTTATAAACATAAAC
CCAATATGGAAGATCTGATAAAGGTCtgataaagcctggaatacacggaa
CGAGGTTGAAGATCTGTATATATTCGTTTGCCGTTTTGGCTATTAGGGTT
ATTTCATATTAGTCCATGAGCTGAGGgcctaattttgagattttgggcTC
AACGAGGTTAccagacatattatataccaaaagATCCCAAATTTTATNAT
AATTAGTCCATGAGCTGGGGGTCAAAATGGGCTCAATGAGGTTAccagac
atattatataccaaaagATCCCAAATTTTATGTAGAGTGGAAATTTTCAT
GTTAGCAAGGTCAAAAAGTATGGAATCGAAAGATTTCGGGTTTAGACTGA
GGGGTGGTATGCTGTTAACACCTCAAAAATTGGGAATTTATTCTCTACCC
NCGGGTTTAGACTGTTTAGACTCAAAAATTGGGAATTTATTCTCTACCCT
AGTTTTACACTTTtgttaatatttcaaaaagtaagAAAGATGTAGACC Run BLAST on NCBI transcript from alignment at sc0001857:2..1973+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038456 ID=TCONS_00038456|Name=TCONS_00038456|organism=Clytia hemisphaerica|type=transcript|length=1972bp|location=Sequence derived from alignment at sc0001857:2..1973+ (Clytia hemisphaerica)
GACTCAGATTATTCGAGTAGTTTTTATAAAACGTCACGATCGTCCAGTAT
GACGGATATGACGTCACCGACTAAATACCGACATCCGACGACAAGCACGA
CGTCAAATCACGATCCGTACGACGGCCAtaagaaaaacaacacaaaCGGT
GCAATATTAGGTAATTATACTTTATAATGATTAACCCATGAAAtttaaat
acacctttcccgagattattttttcaaacatgAAAACGAGGCCGAGTAGG
ATAAAAATGTCAGATATAGAGAAAAAACTGAACTCTTGTTGATTTAATTA
ATGGCGGTTCAGGACTTTTGTCTTCAAATACCTCTTCAACTCTTCACTCC
GTAATATAGCTTGACCAGGGAAATATATTTTCTATTCGTGatgtttatga
cgtaatgttttatacgtaAATCGGGTGTTTGCCActtgttttattgttta
aattttaGTAGCGTGAACACCACAATGTGTCACCCACAAATTCCACCTCA
TTGTTTTGATTCCTCTTATTGCGGAGATTAACGACATATAGATAAAAGAA
CGAGAAGTTACGCACGCGTGTTGTTGACGCAGGAATTGTAAGGGGAAATA
CTGTAGAATAAGCtcaatttattttatatttcagACGATTTTATACTTGG
TCCTCTCAACAAGTGGAAATGACTCTACTCCGAACAATACAAACAATATT
AGTAAACAAATACAAGACATTTTAGACCCTGCTGGTAAATCAAGTGATTT
CAGCGAAGAGGGCTACTCCGCGTCAGAAGAGAGGACGTTTTTGATGATCA
CACGCGGCCACCCGCGCGTCGAAAATCACGTGGCGAGCGAAGTATGAATA
GCTTTAAAAGGCAGTTAAGTGTGACCGGTTACGCAGCGCTTGAAGATAAA
GATGGAAAACCGACGTCGTATTTATGAGCCCGACTTTTGTCGTTATAGTT
GTTTAATGGAGGCAAACTGGAGAAACCAACGCCGTATCTATGATGACTAT
GCTCTGGTTTAGTCGGCCCACTTTCGATCCACTTTATGCATACTTTAATt
agcaattagaataggcagggctaAAAGTGGGCCGACTAAACCAGAGCTAT
GAGCCCGACTTACGTCATTATAGTTGTTTAATGGAGGTAAGCTAGAGGAA
TTGCCGTCACAATCAATCATTGAAGATCTGGTGGAAATTAAATATCGCCG
TCTAATATTCAAAAAATCGCGTCGCCTGTACATactctttttatttttcg
atcCATGCCAGTCAAATATGATAGTTCCGTCGCGTCGATTTTATAATACG
CTTCAGAGATCTCGAAAATATTGTTCAATTGGTTAGTATGTTtgttaact
tgaattttgattggAAGAATCTTTTCAAGTACCCATTTTTGGATTCATAT
TACATGCACCACACATCATACGTATCATTTGGATTATTTCGCTTTCACGT
TAACATTTTGTTATAAACATAAACCCAATATGGAAGATCTGATAAAGGTC
tgataaagcctggaatacacggaaCGAGGTTGAAGATCTGTATATATTCG
TTTGCCGTTTTGGCTATTAGGGTTATTTCATATTAGTCCATGAGCTGAGG
gcctaattttgagattttgggcTCAACGAGGTTAccagacatattatata
ccaaaagATCCCAAATTTTATNATAATTAGTCCATGAGCTGGGGGTCAAA
ATGGGCTCAATGAGGTTAccagacatattatataccaaaagATCCCAAAT
TTTATGTAGAGTGGAAATTTTCATGTTAGCAAGGTCAAAAAGTATGGAAT
CGAAAGATTTCGGGTTTAGACTGAGGGGTGGTATGCTGTTAACACCTCAA
AAATTGGGAATTTATTCTCTACCCNCGGGTTTAGACTGTTTAGACTCAAA
AATTGGGAATTTATTCTCTACCCTAGTTTTACACTTTtgttaatatttca
aaaagtaagAAAGATGTAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038456-exon-sc0001857-1491911889:2..161 | TCONS_00038456-exon-sc0001857-1491911889:2..161 | Clytia hemisphaerica | exon |
| TCONS_00038456-exon-sc0001857-1510915933:2..161 | TCONS_00038456-exon-sc0001857-1510915933:2..161 | Clytia hemisphaerica | exon |
| TCONS_00038456-exon-sc0001857-1575043694:2..161 | TCONS_00038456-exon-sc0001857-1575043694:2..161 | Clytia hemisphaerica | exon |
| TCONS_00038456-exon-sc0001857-1491911889:636..1973 | TCONS_00038456-exon-sc0001857-1491911889:636..1973 | Clytia hemisphaerica | exon |
| TCONS_00038456-exon-sc0001857-1510915933:636..1973 | TCONS_00038456-exon-sc0001857-1510915933:636..1973 | Clytia hemisphaerica | exon |
| TCONS_00038456-exon-sc0001857-1575043694:636..1973 | TCONS_00038456-exon-sc0001857-1575043694:636..1973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001857 | supercontig | sc0001857:2..1973 + |
Blast
The following BLAST results are available for this feature:
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