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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038454 ID=TCONS_00038454|Name=TCONS_00038454|organism=Clytia hemisphaerica|type=transcript|length=758bp
taccgcaaaaaaagtgaaacgctTTGGGGCCATTTACCACGGACTATAAC
ATTGAAATAATAACAAAGTCGTTCTTATATGGTAAACAAACACATTTCTT
TTGTAACTGTTCCCTTTTAAAGTTTGCGCGAGATGGTTTCAGGTTCTCTT
TCAATAGGTATATTCCAAGTTCTTTCGAATCGATGTTGAAAGCATTGAAG
TATGACGACAGGTTAGCAGGTTTATAAGTATCACACCAAAATGTTCCATT
GTTTCCTATTTCCTTCAACTGAACTATTAGATCAAATGCAATGAACCAAG
AGTCTTTGCCATTCGGATTATATTTCAATTCAAGTGGTTTGGTAAGATAG
TAACTTCCATCTAGCTCATCACATCTTTTAACAATTTGACTGAGTGGATT
ATTTTTTCCCCTAACAAGACGTTTGATTTTTTGGAGATGGTTTTCGAACT
GgaaacatgaaaatttcattaaggGTAACTGAAATCTAACCACGTCATCT
GGGAGGTGTTTCACGTTATGTACGTTATAAACACAAAATGTTTCACCGTA
AAAAACATGACAATTGTCAACGAAATACTTTAAAAGACCTCGAGCTGCtc
caatgttttgatttctgatAACACCATTTTCTTCACTGAGCAATCGGATA
GCGATGGAAAAGCTAAGAAAGTGCTTGAAAGTAGGAGAGGAAAGATAGGG
TCGCAAAACTACTAATCCAGTGTACAGCAAAAATGACTTCAGTTCAGTAG
CTTTCCAT Run BLAST on NCBI protein sequence of TCONS_00038454-protein >TCONS_00038454-protein ID=TCONS_00038454-protein|Name=TCONS_00038454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
WKATELKSFLLYTGLVVLRPYLSSPTFKHFLSFSIAIRLLSEENGVIRNQ
NIGAARGLLKYFVDNCHVFYGETFCVYNVHNVKHLPDDVVRFQLPLMKFS
CFQFENHLQKIKRLVRGKNNPLSQIVKRCDELDGSYYLTKPLELKYNPNG
KDSWFIAFDLIVQLKEIGNNGTFWCDTYKPANLSSYFNAFNIDSKELGIY
LLKENLKPSRANFKREQLQKKCVCLPYKNDFVIISML Run BLAST on NCBI transcript from alignment at sc0001855:30296..31053 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038454 ID=TCONS_00038454|Name=TCONS_00038454|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at sc0001855:30296..31053 (Clytia hemisphaerica)
ATGGAAAGCTACTGAACTGAAGTCATTTTTGCTGTACACTGGATTAGTAG
TTTTGCGACCCTATCTTTCCTCTCCTACTTTCAAGCACTTTCTTAGCTTT
TCCATCGCTATCCGATTGCTCAGTGAAGAAAATGGTGTTatcagaaatca
aaacattggaGCAGCTCGAGGTCTTTTAAAGTATTTCGTTGACAATTGTC
ATGTTTTTTACGGTGAAACATTTTGTGTTTATAACGTACATAACGTGAAA
CACCTCCCAGATGACGTGGTTAGATTTCAGTTACccttaatgaaattttc
atgtttcCAGTTCGAAAACCATCTCCAAAAAATCAAACGTCTTGTTAGGG
GAAAAAATAATCCACTCAGTCAAATTGTTAAAAGATGTGATGAGCTAGAT
GGAAGTTACTATCTTACCAAACCACTTGAATTGAAATATAATCCGAATGG
CAAAGACTCTTGGTTCATTGCATTTGATCTAATAGTTCAGTTGAAGGAAA
TAGGAAACAATGGAACATTTTGGTGTGATACTTATAAACCTGCTAACCTG
TCGTCATACTTCAATGCTTTCAACATCGATTCGAAAGAACTTGGAATATA
CCTATTGAAAGAGAACCTGAAACCATCTCGCGCAAACTTTAAAAGGGAAC
AGTTACAAAAGAAATGTGTTTGTTTACCATATAAGAACGACTTTGTTATT
ATTTCAATGTTATAGTCCGTGGTAAATGGCCCCAAagcgtttcacttttt
ttgcggta Coding sequence (CDS) from alignment at sc0001855:30296..31053 >TCONS_00038454 ID=TCONS_00038454|Name=TCONS_00038454|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0001855:30296..31053 (Clytia hemisphaerica)
TGGAAAGCTACTGAACTGAAGTCATTTTTGCTGTACACTGGATTAGTAGT
TTTGCGACCCTATCTTTCCTCTCCTACTTTCAAGCACTTTCTTAGCTTTT
CCATCGCTATCCGATTGCTCAGTGAAGAAAATGGTGTTatcagaaatcaa
aacattggaGCAGCTCGAGGTCTTTTAAAGTATTTCGTTGACAATTGTCA
TGTTTTTTACGGTGAAACATTTTGTGTTTATAACGTACATAACGTGAAAC
ACCTCCCAGATGACGTGGTTAGATTTCAGTTACccttaatgaaattttca
tgtttcCAGTTCGAAAACCATCTCCAAAAAATCAAACGTCTTGTTAGGGG
AAAAAATAATCCACTCAGTCAAATTGTTAAAAGATGTGATGAGCTAGATG
GAAGTTACTATCTTACCAAACCACTTGAATTGAAATATAATCCGAATGGC
AAAGACTCTTGGTTCATTGCATTTGATCTAATAGTTCAGTTGAAGGAAAT
AGGAAACAATGGAACATTTTGGTGTGATACTTATAAACCTGCTAACCTGT
CGTCATACTTCAATGCTTTCAACATCGATTCGAAAGAACTTGGAATATAC
CTATTGAAAGAGAACCTGAAACCATCTCGCGCAAACTTTAAAAGGGAACA
GTTACAAAAGAAATGTGTTTGTTTACCATATAAGAACGACTTTGTTATTA
TTTCAATGTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038454-exon-sc0001855-1491911889:30296..31053 | TCONS_00038454-exon-sc0001855-1491911889:30296..31053 | Clytia hemisphaerica | exon |
| TCONS_00038454-exon-sc0001855-1510915933:30296..31053 | TCONS_00038454-exon-sc0001855-1510915933:30296..31053 | Clytia hemisphaerica | exon |
| TCONS_00038454-exon-sc0001855-1575043694:30296..31053 | TCONS_00038454-exon-sc0001855-1575043694:30296..31053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001855 | supercontig | sc0001855:30296..31053 . |
Blast
The following BLAST results are available for this feature:
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