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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038444 ID=TCONS_00038444|Name=TCONS_00038444|organism=Clytia hemisphaerica|type=transcript|length=689bp
GTTATGGAACCACTCACAAAGTCAACAACCTTATCATTCAAAAGAGCCAA
GGTTCGTTTACAGACGTTGCGAGACGAAAATCAGACCCAAAAACAAAACG
TGGACAAGGATCATTCAAGGCGAATCAAGAAACCCCCAGCGTCGAGTATG
TCAAAACCAAACGTATTGGTCCGCCAACAGCAGAGTTCGTTGAAAATGAA
GAGAGTGCACTTTTGATTGACGACGTAAATCAACGTCATTTCCTTTGGTG
TTTGATGCGTCACAATGATAGCGTACCTTACATTGTACCAAGCTGGACTG
GTTTTCAGATTTCTATTTGCAACAAGATACCAACCTTAAAATCCAACATC
GCATACCTTGATTGTATTTATGCACCTGCCACTCAAATCTCAACTATCTA
TCAGgtTATGGATCGTGCATTAAAAATCATCGATGGACTGAACCTACAAA
ATATGGTTTGTGTATTTGATCAAGCAATTTACTAAAAGGCTGTCGAGATC
AAATGGAAAGAACCTCGCAAGTTTAAAGATGTTTTCATTATGCTTGGAAT
GTTCCACTCATGTTCATTGGTAGAAGAGCTCACCAGTAACCACGAAGAAG
CAGACACCCGTTTGGTTTTGCACGCTAAGCATGCAAGTGAAACGTCTGAA
CAAGTTCTCATCTCAAGTCCAGATACAGATGTATTTGTA Run BLAST on NCBI transcript from alignment at sc0001854:3734..6638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038444 ID=TCONS_00038444|Name=TCONS_00038444|organism=Clytia hemisphaerica|type=transcript|length=2905bp|location=Sequence derived from alignment at sc0001854:3734..6638+ (Clytia hemisphaerica)
GTTATGGAACCACTCACAAAGTCAACAACCTTATCATTCAAAAGAGCCAA
GGTTCGTTTACAGACGTTGCGAGACGAAAATCAGACCCAAAAACAAAACG
TGGACAAGGATCATTCAAGGCGAATCAAGAAACCCCCAGCGTCGAGTATG
TCAAAACCAAACGTATTGGTCCGCCAACAGCAGAGTTCGTTGAAAATGAA
GAGAGTGCACTTTTGATTGACGACGTAAATCAACGTCATTTCCTTTGGTG
TTTGATGCGTCACAATGATAGCGTACCTTACATTGTACCAAGCTGGACTG
GTTTTCAGATTTCTATTTGCAACAAGATACCAACCTTAAAATCCAACATC
GCATACCTTGATTGTATTTATGCACCTGCCACTCAAATCTCAACTATCTA
TCAGGTAATTTTTTTACATGATATTATACTTGTGACTACAGCTAACTATA
AACTAGCATATTGAAAAGGTTTGATGTTTATCATTCAAGAGATAATAAAT
TGCTCATCGcttatttaaattttctttgtttctaaggtTATGGATCGTGC
ATTAAAAATCATCGATGGACTGAACCTACAAAATATGGTTTGTGTATTTG
ATCAAGCAATTTACTAAAAGGCTGTCGAGATCAAATGGAAAGAACCTCGC
AAGTTTAAAGATGTTTTCATTATGCTTGGAATGTTCCACATGATTGTGAT
GTTTATGGGAATTTTAAGCAAACGATTTTCCGCAGCTGGAGTTCGTGATA
TTCTCGTCCAAAGCAACACAATTTCAGAGGGATCTGTTGACCAAGCACTT
TGTGGTAAACAATATAACCGTGGAGTGCGTTGTTACAAGCTAATGTATGA
GGCAGTGATGAGGAGAGTGCTTGAAGAGATCAAGATGGAAGCTGGTGACA
TCATCTATATGGACGACTTCGAGACTATTCAATTCAATCAAGACTTCGTC
AAGAAATACACCGAATTCCTTGATTTCAGAGAAGCACTTGAAAGAGGCTA
TCCCCTTCAGAAGTTCTGGATGAGTTTCCTTAAGATGACAGAAATACTCT
TAAGCACGATCTATTCATTGAGAAGTGGTCATTTTGAGCTTCTTGTAGAA
TGCATAAGGTTGATCATTCCTTTTGCTTTTGCATACGATCACATCAATTA
TGCCAGGTATCTAACAGCTATGCTTGCAGATCTTCTCAAATTACCGGAAG
AATTTCCAAATATTCACGAAGAATTTATGAATGGCAATTTCGTGGCTCAA
CTTACGGATGGAACAAAGTTTTCCCGTGTGGAAACAGACAAGGTGATTGA
GATGACACTCAACAAGGATACAAAAACTCCAGGTAACGattgaaagtgat
tttttaTGATCTCATGAATTTAAATTACATCTCTTAACATTACTATATAG
CTGTTTATTTTGCAATCTCCAGCGCTTGACTTTGCTCGTGTTTCTATATA
TGCTGCTGTAATTATAATTATATGGTTATCCTAAAGTGCTTTGTTCTCCT
TCTCTATTATCGTTCAGGTGGAACAACTGGATTCTCAACAAACGTCAACG
CTGTGAAGAGATGGGAGGTCAATGCTTCATACAGAGCTGCTCTCAGAACA
TGTTTTCACAAGCATCTTAATTTCTCTAAAAAGAAGCACGCCCATCCTGA
TTTCGGACCAACAAGGATCACTAAAGATCAACAAGCAATTCACGAGATCT
TGAACATTATGACACATCGCTTCATCGATCCGATCAGTGAACAANTAAGA
TCAGCAAGCAATTCACGAGATCTTGGACATTATGCAATATACGCATCGCT
TCATCGATTCGATCAGTGAACAACCCTTGTTATCTATCTCCAATGGAATT
CTGGCAAATGAGAAAGTGACAAATGACATGCTCTCGGCAAAGATTTTCAC
TTCAAACCGACTTGGAAAAGACCGAGAGAAATGTTTTTACGATCCTTTAA
AGTTGATGAAGCTTGGTACCTTTGTAACCATGAACAAACTAAAGAATGCA
AAGTCAAATCAAAAGTCATTCCACTCCAAGCCACAAAGGATCTTTTTGCA
AAGATATCTCTCATCGCTCAGATTCGTTCTATCGACATGAGGTCAATATT
TCAATTTCCACTCGGTCCTTTACCTTGGTCCCTTGCTGACCCTATTGGTT
CGTTAAAGAAAACATCTAAATCATCATTGCTTCGTAAACTGGAAGGCAAG
GTTGACCCGATCGGTAGTCTTCAAGAACGTCATACTTTGATCATCGATGG
TATGGCTTACGTTCAGCAGGCAAAGGTCACTGACAAAACCTTCGGGGAAT
TTGCGATGGATCTACTCGAACGAATCCTTCGCGTTGGATCAAGATCAAAT
CGAATCGATGTTGTCTTCGATGATTATCGTGATACTCCAATCAAAAATGT
CGAAAGAAGTAGACGGTTATCAGGAAATTTGCTTATCCAGTCCATTCTCC
CAACAactgtggggggggggggctNTTTTACCCAAAAATTTGGTCTCTGT
TGtcatttgtaaaaaataattgttaatTTTCAGTAGTTTTGCAAAATGTC
ATTCTAATTGTGTTTCCCAAAACAATTAAGGGGTGGGAAAGAtctgctta
caaaaattaaatcgtctCTGTTATTGGAGGCAGTGTTTAAGTACGTTTGC
AGTTTCTATTTTTCTATCAAAAGAGTGTTTTCTCTGAGAGATCTGCTTAT
CTGTCTTTCAAAAATAGCATCTAAAAACCTCTTCGTGACAGATGGAGAAT
CAGTGTTCCATTTAACCGAACACTCATGTTCATTGGTAGAAGAGCTCACC
AGTAACCACGAAGAAGCAGACACCCGTTTGGTTTTGCACGCTAAGCATGC
AAGTGAAACGTCTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTAT
TTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038444-exon-sc0001854-1491911889:3734..4137 | TCONS_00038444-exon-sc0001854-1491911889:3734..4137 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1510915933:3734..4137 | TCONS_00038444-exon-sc0001854-1510915933:3734..4137 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1575043694:3734..4137 | TCONS_00038444-exon-sc0001854-1575043694:3734..4137 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1491911889:4270..4422 | TCONS_00038444-exon-sc0001854-1491911889:4270..4422 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1510915933:4270..4422 | TCONS_00038444-exon-sc0001854-1510915933:4270..4422 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1575043694:4270..4422 | TCONS_00038444-exon-sc0001854-1575043694:4270..4422 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1491911889:6507..6638 | TCONS_00038444-exon-sc0001854-1491911889:6507..6638 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1510915933:6507..6638 | TCONS_00038444-exon-sc0001854-1510915933:6507..6638 | Clytia hemisphaerica | exon |
| TCONS_00038444-exon-sc0001854-1575043694:6507..6638 | TCONS_00038444-exon-sc0001854-1575043694:6507..6638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001854 | supercontig | sc0001854:3734..6638 + |
Blast
The following BLAST results are available for this feature:
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