TCONS_00038419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038419
Unique NameTCONS_00038419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038419 ID=TCONS_00038419|Name=TCONS_00038419|organism=Clytia hemisphaerica|type=transcript|length=970bp
GAATGTAGATTCCCTGATATCACCAAAAGAAGAGACAGGTGGAGATTCCT
TTGGTAACTCGCGTTGGATGAGTAATTTACCATCACATTTAACGAAGATT
TCCTTGAACAGACTGGCAATTCCTGGTTCACATAACAGTGGAGCGTATTC
TTTGAATCCGACGACTCCAATGTCTCCGGATAAATCAAAGCTGATCAAAA
CTTTTGGGAATTGTAACAAACAATTTGTCATTAACTGGTCCTTGTGTCAG
TCAATGACCATTACTGAACAACTCAATCATGGTGTGCGATATTTCGATAT
GCGCCCTGGGTTCATCGATTACGAGGATGACTTCTTTTTTGTGCATGGTG
TACATGGGGTTTTGATAAGGGACTTGTTACACCAAATGCGCCAATTTCTT
GATTTTAACCCACGTGAAGTAATCCTTGTCGACTTCAATCACTTTCATTC
TTTCGACGAAATCAGACACAAACGATTGGTTGAAATGATTCATAAAGTCT
TTGATTCTCTTCTTGTACCACGTGACATATTCGATGATGTCACTTTCACT
TTATCCGATCTGTGGCGCATGGACAAACGAGTAATATTAAGTTACAAACA
TGAAGAAACATGCTCTAAGCATAATGCGTTCTGGTTTTCAAGAGAATGCG
TCAACAGCCCGTGGTTCAACACAAACAATATATCTACCTTAAAACACAGG
CTAAATGAGTTACACCGAAACCCGGATGAGAAGAAATTCAACGTTTACCA
AGCTATATTGACCGCACGAAAATCCACAATCGCCCTCCGCCCAACATCAA
CTTTACGCCAATCTCTTGTACGACAGTGTAATAATGGAATTAATGAGTGG
TTAGATGGTATATTTGCACAATGTAAACAAGGCTTTAATATTGTGATGTG
TGATTTTGTATGTGAGGATGGATGTGTAGAAAAAATATTACGATTGAATA
AATTGATTGGGAAGCAGATT
Run BLAST on NCBI

protein sequence of TCONS_00038419-protein

>TCONS_00038419-protein ID=TCONS_00038419-protein|Name=TCONS_00038419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
NVDSLISPKEETGGDSFGNSRWMSNLPSHLTKISLNRLAIPGSHNSGAYS
LNPTTPMSPDKSKLIKTFGNCNKQFVINWSLCQSMTITEQLNHGVRYFDM
RPGFIDYEDDFFFVHGVHGVLIRDLLHQMRQFLDFNPREVILVDFNHFHS
FDEIRHKRLVEMIHKVFDSLLVPRDIFDDVTFTLSDLWRMDKRVILSYKH
EETCSKHNAFWFSRECVNSPWFNTNNISTLKHRLNELHRNPDEKKFNVYQ
AILTARKSTIALRPTSTLRQSLVRQCNNGINEWLDGIFAQCKQGFNIVMC
DFVCEDGCVEKILRLNKLIGKQI
Run BLAST on NCBI

transcript from alignment at sc0001851:27814..29558-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038419 ID=TCONS_00038419|Name=TCONS_00038419|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at sc0001851:27814..29558- (Clytia hemisphaerica)
GAATGTAGATTCCCTGATATCACCAAAAGAAGAGACAGGTGGAGATTCCT
TTGGTAACTCGCGTTGGATGAGTAATTTACCATCACATTTAACGAAGATT
TCCTTGAACAGACTGGCAATTCCTGGTTCACATAACAGTGGAGCGTATTC
TTTGAATCCGACGACTCCAATGTCTCCGGGTAAGACCGAATAGTAAACAA
TATATAACATAACCTGAAAATTTTACCGAAGTTTTTCCACTAGTTTGAAT
ATTATAAGAGACTTCGCCTGAAGATTTGGAAATCTATTTCAGTCTTCTAA
TATGTCAGATTTGGTCAAATAAACTTCTTAGTAGGGCTTCCTGTATTTTC
AATAATCGATAGCTTCTAGCATTACCTACTTATTTAGGTATATATCTCAT
AATTTCAGCGGCTCAAAATTATTCAGCACTTGATACGAATACTAAGCAGA
TATTCAATAGGTAAAAGTTGGTTATTGAGATTTATTAACCCGAGATGATG
TAATATTCAACGAGGCGAAGCCGAGTTTAATATACATCACCGAGATCCTA
TCAACGAAAACCTATTGAATATATGTTTTATTATATACCTAGAGGCAAAA
ACAAAGCATTAATTGTGTCAATAGTCGAATGTTTCACATAAAACACTCCC
CATAAAGGAACGTTCAAATGTTTTTCTTTTTTTTTAATGATTTTCTTAAT
TACTTTGAGTCATAAAAATTTGTTAATGAAATTGACAATAGATTTATTTT
AATTTCTTTGATAACAACAAGAGCGACACAAAAAAATAAACTTTGAAACC
AAAATTTAAAAAAAAATTCTACCGTGGTATAATAGCCATGGTATATCAGG
AATTATTCAATGGCTGTTTTTGCCTACAGGTATATAATAATATCCTTTAA
AGCACATTTACTAAATTGTTTTTATTTTTTAATTTTAATTGATGCCTTCT
TCAGATAAATCAAAGCTGATCAAAACTTTTGGGAATTGTAACAAACAATT
TGTCATTAACTGGTCCTTGTGTCAGTCAATGACCATTACTGAACAACTCA
ATCATGGTGTGCGATATTTCGATATGCGCCCTGGGTTCATCGATTACGAG
GATGACTTCTTTTTTGTGCATGGTGTACATGGGGTTTTGATAAGGGACTT
GTTACACCAAATGCGCCAATTTCTTGATTTTAACCCACGTGAAGTAATCC
TTGTCGACTTCAATCACTTTCATTCTTTCGACGAAATCAGACACAAACGA
TTGGTTGAAATGATTCATAAAGTCTTTGATTCTCTTCTTGTACCACGTGA
CATATTCGATGATGTCACTTTCACTTTATCCGATCTGTGGCGCATGGACA
AACGAGTAATATTAAGTTACAAACATGAAGAAACATGCTCTAAGCATAAT
GCGTTCTGGTTTTCAAGAGAATGCGTCAACAGCCCGTGGTTCAACACAAA
CAATATATCTACCTTAAAACACAGGCTAAATGAGTTACACCGAAACCCGG
ATGAGAAGAAATTCAACGTTTACCAAGCTATATTGACCGCACGAAAATCC
ACAATCGCCCTCCGCCCAACATCAACTTTACGCCAATCTCTTGTACGACA
GTGTAATAATGGAATTAATGAGTGGTTAGATGGTATATTTGCACAATGTA
AACAAGGCTTTAATATTGTGATGTGTGATTTTGTATGTGAGGATGGATGT
GTAGAAAAAATATTACGATTGAATAAATTGATTGGGAAGCAGATT

Coding sequence (CDS) from alignment at sc0001851:27814..29558-

>TCONS_00038419 ID=TCONS_00038419|Name=TCONS_00038419|organism=Clytia hemisphaerica|type=CDS|length=1938bp|location=Sequence derived from alignment at sc0001851:27814..29558- (Clytia hemisphaerica)
ATAAATCAAAGCTGATCAAAACTTTTGGGAATTGTAACAAACAATTTGTC
ATTAACTGGTCCTTGTGTCAGTCAATGACCATTACTGAACAACTCAATCA
TGGTGTGCGATATTTCGATATGCGCCCTGGGTTCATCGATTACGAGGATG
ACTTCTTTTTTGTGCATGGTGTACATGGGGTTTTGATAAGGGACTTGTTA
CACCAAATGCGCCAATTTCTTGATTTTAACCCACGTGAAGTAATCCTTGT
CGACTTCAATCACTTTCATTCTTTCGACGAAATCAGACACAAACGATTGG
TTGAAATGATTCATAAAGTCTTTGATTCTCTTCTTGTACCACGTGACATA
TTCGATGATGTCACTTTCACTTTATCCGATCTGTGGCGCATGGACAAACG
AGTAATATTAAGTTACAAACATGAAGAAACATGCTCTAAGCATAATGCGT
TCTGGTTTTCAAGAGAATGCGTCAACAGCCCGTGGTTCAACACAAACAAT
ATATCTACCTTAAAACACAGGCTAAATGAGTTACACCGAAACCCGGATGA
GAAGAAATTCAACGTTTACCAAGCTATATTGACCGCACGAAAATCCACAA
TCGCCCTCCGCCCAACATCAACTTTACGCCAATCTCTTGTACGACAGTGT
AATAATGGAATTAATGAGTGGTTAGATGGTATATTTGCACAATGTAAACA
AGGCTTTAATATTGTGATGTGTGATTTTGTATGTGAGGATGGATGTGTAG
AAAAAATATTACGATTGAATAAATTGATTGGGAAGCAGATTAATGTAGAT
TCCCTGATATCACCAAAAGAAGAGACAGGTGGAGATTCCTTTGGTAACTC
GCGTTGGATGAGTAATTTACCATCACATTTAACGAAGATTTCCTTGAACA
GACTGGCAATTCCTGGTTCACATAACAGTGGAGCGTATTCTTTGAATCCG
ACGACTCCAATGTCTCCGGATAAATCAAAGCTGATCAAAACTTTTGGGAA
TTGTAACAAACAATTTGTCATTAACTGGTCCTTGTGTCAGTCAATGACCA
TTACTGAACAACTCAATCATGGTGTGCGATATTTCGATATGCGCCCTGGG
TTCATCGATTACGAGGATGACTTCTTTTTTGTGCATGGTGTACATGGGGT
TTTGATAAGGGACTTGTTACACCAAATGCGCCAATTTCTTGATTTTAACC
CACGTGAAGTAATCCTTGTCGACTTCAATCACTTTCATTCTTTCGACGAA
ATCAGACACAAACGATTGGTTGAAATGATTCATAAAGTCTTTGATTCTCT
TCTTGTACCACGTGACATATTCGATGATGTCACTTTCACTTTATCCGATC
TGTGGCGCATGGACAAACGAGTAATATTAAGTTACAAACATGAAGAAACA
TGCTCTAAGCATAATGCGTTCTGGTTTTCAAGAGAATGCGTCAACAGCCC
GTGGTTCAACACAAACAATATATCTACCTTAAAACACAGGCTAAATGAGT
TACACCGAAACCCGGATGAGAAGAAATTCAACGTTTACCAAGCTATATTG
ACCGCACGAAAATCCACAATCGCCCTCCGCCCAACATCAACTTTACGCCA
ATCTCTTGTACGACAGTGTAATAATGGAATTAATGAGTGGTTAGATGGTA
TATTTGCACAATGTAAACAAGGCTTTAATATTGTGATGTGTGATTTTGTA
TGTGAGGATGGATGTGTAGAAAAAATATTACGATTGAATAAATTGATTGG
GAAGCAGATTAATGTAGATTCCCTGATATCACCAAAAGAAGAGACAGGTG
GAGATTCCTTTGGTAACTCGCGTTGGATGAGTAATTTACCATCACATTTA
ACGAAGATTTCCTTGAACAGACTGGCAATTCCTGGTTCACATAACAGTGG
AGCGTATTCTTTGAATCCGACGACTCCAATGTCTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023013XLOC_023013Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038419-proteinTCONS_00038419-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038419-exon-sc0001851-1575043694:29380..29558TCONS_00038419-exon-sc0001851-1575043694:29380..29558Clytia hemisphaericaexon
TCONS_00038419-exon-sc0001851-1575043694:27814..28604TCONS_00038419-exon-sc0001851-1575043694:27814..28604Clytia hemisphaericaexon
TCONS_00038419-exon-sc0001851-1510915933:29380..29558TCONS_00038419-exon-sc0001851-1510915933:29380..29558Clytia hemisphaericaexon
TCONS_00038419-exon-sc0001851-1510915933:27814..28604TCONS_00038419-exon-sc0001851-1510915933:27814..28604Clytia hemisphaericaexon
TCONS_00038419-exon-sc0001851-1491911889:29380..29558TCONS_00038419-exon-sc0001851-1491911889:29380..29558Clytia hemisphaericaexon
TCONS_00038419-exon-sc0001851-1491911889:27814..28604TCONS_00038419-exon-sc0001851-1491911889:27814..28604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001851supercontigsc0001851:27814..29558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82283	4.45525	1.42521	1.03285	30.7432	24.3931	33.0254	30.2446	9.27142	12.652	8.73796	4.28471	6.60416	5.9891	7.27989	9.9431	12.0741	11.6223	6.04607	8.50485	9.19525	9.16812	11.8667	11.3717	9.76048	11.0786	7.86279	8.32316	22.5088	27.2032
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000909PLipase_C_PInositol-sp_X_dom
IPR017946PLC-like_Pdiesterase_TIM-brl
Vocabulary: Molecular Function
TermDefinition
GO:0008081phosphoric diester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
molecular_function GO:0008081 phosphoric diester hydrolase activity
Blast
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BLAST of TCONS_00038419 vs. Swiss-Prot (Human)
Match: PLCX2 (PI-PLC X domain-containing protein 2 OS=Homo sapiens GN=PLCXD2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.705e-46
Identity = 94/262 (35.88%), Postives = 150/262 (57.25%), Query Frame = 2 
Query:   56 NSRWMSNLPSHLTKISLNRLAIPGSHNSGAYSLNPTTPMSPDKSKLIKTFGNCN--KQFVINWSLCQSMTITEQLNHGVRYFDMR----PGFIDYEDDFFFVHGVHGVLIRDLLHQMRQFLDFNPREVILVDFNHFHSFDEIRHKRLVEMIHKVFDSLLVPRDIFDDVTFTLSDLWRMDKRVILSYKHEETCSKHNAFWFSRECVNSPWFNTNNISTLKHRL-NELHRNPDEKKFNVYQAILTARKSTIALRPTSTLRQSLV 820
            N+ WM++LP HL  + L+ LAIPGSH+S +Y ++  +P+ PD+++ IK     +  K+ +  WS+ Q++T  EQL  G+RYFD+R    PG  D + + +F+HG+ G+ + D L ++  FL  +P+E+I +DFNHF++ DE  HK LV  I + F + L P    +  + TL  LW  + +V++ Y H     ++   W  ++ + +PW NT ++  L   L   L        F+V QAILT R  TIA      L+ +LV
Sbjct:   32 NADWMASLPPHLHNLPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAIKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPG--DADQEIYFIHGLFGIKVWDGLMEIDSFLTQHPQEIIFLDFNHFYAMDETHHKCLVLRIQEAFGNKLCPACSVE--SLTLRTLWEKNCQVLIFY-HCPFYKQYPFLWPGKK-IPAPWANTTSVRKLILFLETTLSERASRGSFHVSQAILTPRVKTIARGLVGGLKNTLV 287
The following BLAST results are available for this feature:
BLAST of TCONS_00038419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLCX23.705e-4635.88PI-PLC X domain-containing protein 2 OS=Homo sapie... [more]
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