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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038400 ID=TCONS_00038400|Name=TCONS_00038400|organism=Clytia hemisphaerica|type=transcript|length=1187bp
ggAATTACTTTGCAAAGTTTAAGCATTGTGGGGAAAGAACCAGATTCAAA
AGaaaggttaaaaagaaaggaTAGTGGTCCAGAAAGATCAAATTTTAGAA
GGCGGAGGAGTTTTGGGGGGATACTATTAGGACCAGATGATTTATTTAGA
GAAAGGGAATTAATAATTAACAAGACTTCAGCTGGGTTGACACGGTCAAG
AAATATAGAATTTCTGATGCGGTTCTTAAGATGATGGGAAAAATGACGGT
TGGTTGGACCAATGTTTGAGCGAACAGTATCTGCAATGGATGTAAAGAAG
TGATTGAAGCCATTGGCAACAACTTTTGGATCAGACGTTAGAAGACCATC
AACACGAACAGAGGAGGGAGAAGATTTAGAGTTTGAACCAATGATCTCTC
TTATGCCTTCCCAAACTTTAAGAATATTAGTAGCATGGACAGAGAAATAA
TGAGAGTAATGATTATTTTTACTCTTACGTGTAAGAGTAACTATAAGGTT
TTTGTAAGTTTTGTAGCGTTGATAATAAAAAGATTTCATAATTGGGTCTT
TCGTTTTGATGTATTTTCTGGAGTAAAATTGGCGTTGCGAGATAGATTTA
ATTATTCCAGGGGTAATCCATGGTTTTGCTCTGGTCTTTTGTTAGCGCTT
TGTCACGTTCACAGTTGGAACATGTTGATCGATTAGTTTTTTAACTAAAT
CAtaaaaattttggaaagcttgatCAACATCTGTCATGTGATATAATTTG
TTTGCCCAATCAATATCAAGAAAATCTAGAATAAAATTTTGTTGGTCAAA
ATTCTTCCAGTCTTTCCTGAAAGTTTTACCAGGCTTTTTGATATTAGAAG
AACCACAGACAAGGTAGAATTGGGGAAGGTGATCAGAGATAGAGTAAAGC
AAATTTCCAGAGAAGCTAGGTTTCTCGGAAATTGAAGAAAAGATATTGTC
AATAAGTGCCATAGAATGGTCAGTAATACGAGTAGGAAGAAAAATATTAG
GTATAAGAAAGTGTGAGCCAAGGTTATTCAGGTAAGATAAAATGTTATGG
TCAGATGATGCGTTCAGGAGGTTAGTATTGAAGTCACCAAGAAGaagaat
ttgtttgttttctttgttgattttatttaaaagagGTTCTAGGAGTTTGT
TAAAGTCATCGAGAGAAAGAAGTGGGTGTTTGTAAAT Run BLAST on NCBI protein sequence of TCONS_00038400-protein >TCONS_00038400-protein ID=TCONS_00038400-protein|Name=TCONS_00038400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
IYKHPLLSLDDFNKLLEPLLNKINKENKQILLLGDFNTNLLNASSDHNIL
SYLNNLGSHFLIPNIFLPTRITDHSMALIDNIFSSISEKPSFSGNLLYSI
SDHLPQFYLVCGSSNIKKPGKTFRKDWKNFDQQNFILDFLDIDWANKLYH
MTDVDQAFQNFYDLVKKLIDQHVPTVNVTKR Run BLAST on NCBI transcript from alignment at sc0001842:29048..30234 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038400 ID=TCONS_00038400|Name=TCONS_00038400|organism=Clytia hemisphaerica|type=transcript|length=1187bp|location=Sequence derived from alignment at sc0001842:29048..30234 (Clytia hemisphaerica)
ATTTACAAACACCCACTTCTTTCTCTCGATGACTTTAACAAACTCCTAGA
ACctcttttaaataaaatcaacaaagaaaacaaacaaattcttCTTCTTG
GTGACTTCAATACTAACCTCCTGAACGCATCATCTGACCATAACATTTTA
TCTTACCTGAATAACCTTGGCTCACACTTTCTTATACCTAATATTTTTCT
TCCTACTCGTATTACTGACCATTCTATGGCACTTATTGACAATATCTTTT
CTTCAATTTCCGAGAAACCTAGCTTCTCTGGAAATTTGCTTTACTCTATC
TCTGATCACCTTCCCCAATTCTACCTTGTCTGTGGTTCTTCTAATATCAA
AAAGCCTGGTAAAACTTTCAGGAAAGACTGGAAGAATTTTGACCAACAAA
ATTTTATTCTAGATTTTCTTGATATTGATTGGGCAAACAAATTATATCAC
ATGACAGATGTTGatcaagctttccaaaatttttaTGATTTAGTTAAAAA
ACTAATCGATCAACATGTTCCAACTGTGAACGTGACAAAGCGCTAACAAA
AGACCAGAGCAAAACCATGGATTACCCCTGGAATAATTAAATCTATCTCG
CAACGCCAATTTTACTCCAGAAAATACATCAAAACGAAAGACCCAATTAT
GAAATCTTTTTATTATCAACGCTACAAAACTTACAAAAACCTTATAGTTA
CTCTTACACGTAAGAGTAAAAATAATCATTACTCTCATTATTTCTCTGTC
CATGCTACTAATATTCTTAAAGTTTGGGAAGGCATAAGAGAGATCATTGG
TTCAAACTCTAAATCTTCTCCCTCCTCTGTTCGTGTTGATGGTCTTCTAA
CGTCTGATCCAAAAGTTGTTGCCAATGGCTTCAATCACTTCTTTACATCC
ATTGCAGATACTGTTCGCTCAAACATTGGTCCAACCAACCGTCATTTTTC
CCATCATCTTAAGAACCGCATCAGAAATTCTATATTTCTTGACCGTGTCA
ACCCAGCTGAAGTCTTGTTAATTATTAATTCCCTTTCTCTAAATAAATCA
TCTGGTCCTAATAGTATCCCCCCAAAACTCCTCCGCCTTCTAAAATTTGA
TCTTTCTGGACCACTAtcctttctttttaacctttCTTTTGAATCTGGTT
CTTTCCCCACAATGCTTAAACTTTGCAAAGTAATTcc Coding sequence (CDS) from alignment at sc0001842:29048..30234 >TCONS_00038400 ID=TCONS_00038400|Name=TCONS_00038400|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0001842:29048..30234 (Clytia hemisphaerica)
ATTTACAAACACCCACTTCTTTCTCTCGATGACTTTAACAAACTCCTAGA
ACctcttttaaataaaatcaacaaagaaaacaaacaaattcttCTTCTTG
GTGACTTCAATACTAACCTCCTGAACGCATCATCTGACCATAACATTTTA
TCTTACCTGAATAACCTTGGCTCACACTTTCTTATACCTAATATTTTTCT
TCCTACTCGTATTACTGACCATTCTATGGCACTTATTGACAATATCTTTT
CTTCAATTTCCGAGAAACCTAGCTTCTCTGGAAATTTGCTTTACTCTATC
TCTGATCACCTTCCCCAATTCTACCTTGTCTGTGGTTCTTCTAATATCAA
AAAGCCTGGTAAAACTTTCAGGAAAGACTGGAAGAATTTTGACCAACAAA
ATTTTATTCTAGATTTTCTTGATATTGATTGGGCAAACAAATTATATCAC
ATGACAGATGTTGatcaagctttccaaaatttttaTGATTTAGTTAAAAA
ACTAATCGATCAACATGTTCCAACTGTGAACGTGACAAAGCGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038400-exon-sc0001842-1491911889:29048..30234 | TCONS_00038400-exon-sc0001842-1491911889:29048..30234 | Clytia hemisphaerica | exon |
| TCONS_00038400-exon-sc0001842-1510915933:29048..30234 | TCONS_00038400-exon-sc0001842-1510915933:29048..30234 | Clytia hemisphaerica | exon |
| TCONS_00038400-exon-sc0001842-1575043694:29048..30234 | TCONS_00038400-exon-sc0001842-1575043694:29048..30234 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001842 | supercontig | sc0001842:29048..30234 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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