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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038399 ID=TCONS_00038399|Name=TCONS_00038399|organism=Clytia hemisphaerica|type=transcript|length=287bp
AATGGTGTTCTGATGTATGCCAAGAGAAACTCCAAGGTCGATTATAAAGT
GCAACAAAGATGGTACGAGAAACTTCACGAATGGGAGAACGCATTGAATG
CTTACGATAAGAAACATGCAACACACCCTGACGATCATGAAATCTTGTTA
GGCCGTATGCGGTGTTTGGAAGCGCTCGGAAAATGGGGTGAATTACACAA
TTTGGCTTGTGAGAAATGGTCAGCGGTAAGCGATGATGTTCGACATAAAA
TGGCAAGAACTGCTGCTTCCGCTGCTTGGGGTCTGGG Run BLAST on NCBI transcript from alignment at sc0001842:4208..6636- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038399 ID=TCONS_00038399|Name=TCONS_00038399|organism=Clytia hemisphaerica|type=transcript|length=2429bp|location=Sequence derived from alignment at sc0001842:4208..6636- (Clytia hemisphaerica)
AATGGTGTTCTGATGTATGCCAAGAGAAACTCCAAGGTCGATTATGTAAG
TTTTGTGCTGCACAGTGATCTTTCATTGGAACTTTTGTAAAATCGGGATT
ATTTTGGCTAATTTGCTTTGTATCTCCTTAAGTAGTGCTCATAACTAAAT
GAGATTTGGTACACTAAGTCTCCTTATAGGAGTAATAAGCAGTAATTCAG
TATATTCGGATCGGCCAAAATTTGTCAAATTAAGTTCCCACTAAATTTAA
TTTTTCTTTCCGTCCGCCAAATTAAATTTCCGCCAAATTTTCTTCCCTTA
TGGTAAATGAGTCTGGATAAAAGTACACCAATCTTCATAACTCGAACCAC
TTGTACTCGAATGTTTCTGGAGGTTAATCAATTCAGGTAGCCGACCCTGA
GTCTCGATAGACTGTTAGTCTCGTGTCTCTGTCTCATATCTCAAATTATG
GAGACTCCGCTGTGTTCATGATATACATGACGTAATCTTGTGTACGGAAG
CACGCGAAATAGCCTGGGCGTATTCTACTAGTTTTGGACCTACCCCGTTG
GAGGTCCTATAAATTAACCGTTGTATGTTCGTCCGTTCGTTCGTTCGTTC
GTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTTT
TTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCTGATT
TTCGGAAAAAAAATTTTTTAGGCAAATTTGGGCCAAAAAACGGCTAAAAA
ACGGGTTGTGAAAAATTGAATCATTAATTTTATCTGATTTTTTGTATGAA
AGTAGGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGCAAAA
AAAATTTTTTGGCTCAAAAAACGCATGTTTATCTATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTCAATTATTTTTATGA
GATAGATGTATTTTTTGCTCATGAGGGCTTACTTTTGAAGAATATGTGTG
TTTAGACATGAAATTTAGGCTGCTTGGCGTGTTTTTGTAGAAAAACAGGC
CAAATTCGATATTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCT
TTTCTCGAGATTGCCTGTTTCATTCTTAATTATTTTTTGCACAAAGATGT
GTAACTATAAACCCTCGAATGTGACCGAGCCCAATTTTCGAAAAAAAATG
TTTTTGGGCAAATTTGGGCCAACAAACGATTAACGGTTTTTTGGACTTTA
AAAATTGGATCATTAATTTTTTCTATTTTTTTTTTAATGAAAGTAGTTAA
AGATGGCTCAAGCAGATATTTGTAAAAAACGATTTTTTCAGCTCAAAAAA
CGCATCTTTATCTATCAGAATCACTATTAATAAGCATACATTAATGTTCT
TAGCCAAATTACTCAATATTTTGATGAGATCGAAGTTTTTTTTGCTCACG
ATGTCTTGAATATGAAAGAATATTTATAGAGCATGAAATTTTGGTTTCTA
AACGGTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTAT
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATAGATCGTCACTATTAG
TGTTCTGAATGATTGTTTAATGGTCACGCTCACGTAGATATCAATTATAT
ATGTGTTAAATGCATAACCAAGTAGGTCCATAAAAGTATCACTAGTTTTA
TTGTTAAAATGCAAATAACCGGTTCTTTCGAGTATTTCCGTATAAAACAT
GAATACCACGATACTTCTTATGAACTATAGTAGAAAGTGTCAATGTTTCC
ATATTACTATCCAATAGAAAGTGCAACAAAGATGGTACGAGAAACTTCAC
GAATGGGAGAACGCATTGAATGCTTACGATAAGAAACATGCAACACACCC
TGACGATCATGAAATCTTGTTAGGCCGTATGCGGTGTTTGGAAGCGCTCG
GAAAATGGTAAGATCGTCCGGAAAATCTGATGCATCACACCTAGCTGTCA
GGTCCCAATCTACTCAACTGATCTAATACTCTAATTTTCTTTCACGCAGT
AACGTCTATTCCGCTTTTATAATACTTTTCAAGCATTAAAGATTAAAATG
TTATGTATACATGTTTAACCTTTTTAGGGGTGAATTACACAATTTGGCTT
GTGAGAAATGGTCAGCGGTAAGCGATGATGTTCGACATAAAATGGCAAGA
ACTGCTGCTTCCGCTGCTTGGGGTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038399-exon-sc0001842-1575043694:6592..6636 | TCONS_00038399-exon-sc0001842-1575043694:6592..6636 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1575043694:4480..4619 | TCONS_00038399-exon-sc0001842-1575043694:4480..4619 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1575043694:4208..4309 | TCONS_00038399-exon-sc0001842-1575043694:4208..4309 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1510915933:6592..6636 | TCONS_00038399-exon-sc0001842-1510915933:6592..6636 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1510915933:4480..4619 | TCONS_00038399-exon-sc0001842-1510915933:4480..4619 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1510915933:4208..4309 | TCONS_00038399-exon-sc0001842-1510915933:4208..4309 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1491911889:6592..6636 | TCONS_00038399-exon-sc0001842-1491911889:6592..6636 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1491911889:4480..4619 | TCONS_00038399-exon-sc0001842-1491911889:4480..4619 | Clytia hemisphaerica | exon |
| TCONS_00038399-exon-sc0001842-1491911889:4208..4309 | TCONS_00038399-exon-sc0001842-1491911889:4208..4309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001842 | supercontig | sc0001842:4208..6636 - |
Blast
BLAST of TCONS_00038399 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.977e-27 Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 1
Query: 4 GVLMYAKRNSKVDYKVQQRWYEKLHEWENALNAYDKKHATHPDDHEILLGRMRCLEALGKWGELHNLACEKWSAVSDDVRHKMARTAASAAWGL 285
GVL YA ++ + ++Q WYEKLHEWE+AL AYDKK T+ DD E++LGRMRCLEALG+WG+LH CEKW+ V+D+ + KMAR AA+AAWGL
Sbjct: 1431 GVLEYAMKHFG-ELEIQATWYEKLHEWEDALVAYDKKMDTNKDDPELMLGRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGL 1523
The following BLAST results are available for this feature:
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