TCONS_00038398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038398
Unique NameTCONS_00038398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038398 ID=TCONS_00038398|Name=TCONS_00038398|organism=Clytia hemisphaerica|type=transcript|length=146bp
AGATACTTTCGAAGGAGCTTTCTTCAGAGCTGTCTTACAAATCCATAAAA
ATCAATTCGTCAGAGCACAAAGTTGTATCGATAATGCTCGAGACATGTTG
GATACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTT
Run BLAST on NCBI

transcript from alignment at sc0001842:3405..3878-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038398 ID=TCONS_00038398|Name=TCONS_00038398|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at sc0001842:3405..3878- (Clytia hemisphaerica)
AGATACTTTCGAAGGAGCTTTCTTCAGAGCTGTCTTACAAATCCATAAAA
ATCAATTCGTCAGAGCACAAAGTGTAAGTCTTGGGGATTAGTTTTGTGGC
CCTTTAGTCAAAGTGGTAAGTAGACTCATTGGGCTATGCCTACTAATCTT
TTACGCCCTTTCTTTTAGGCAGTCATTTTTGGAGTGTCAAATTCCCTCCG
CGTTTCTAGGCCAATTTTAAAGCATCCCTTAGATTAGCATCGAAATATCT
CTGGATTTGTTTTTGGTTTGCCATAACCGCTCTCAGCCCTATAATTTTAG
CGCCCTAGCATTTTCAGTACTGTATACCTACTAGTATGAGTCTGCTGGAG
GGGGTTGTTCATAAGTTTTCATCCTATTCCATCTTATCATTCTTCTTTCA
GTGTATCGATAATGCTCGAGACATGTTGGATACTGAATTGACGGCTATGG
TCGGAGAATCCTACAACAGAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022992XLOC_022992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038398-exon-sc0001842-1575043694:3806..3878TCONS_00038398-exon-sc0001842-1575043694:3806..3878Clytia hemisphaericaexon
TCONS_00038398-exon-sc0001842-1575043694:3405..3477TCONS_00038398-exon-sc0001842-1575043694:3405..3477Clytia hemisphaericaexon
TCONS_00038398-exon-sc0001842-1510915933:3806..3878TCONS_00038398-exon-sc0001842-1510915933:3806..3878Clytia hemisphaericaexon
TCONS_00038398-exon-sc0001842-1510915933:3405..3477TCONS_00038398-exon-sc0001842-1510915933:3405..3477Clytia hemisphaericaexon
TCONS_00038398-exon-sc0001842-1491911889:3806..3878TCONS_00038398-exon-sc0001842-1491911889:3806..3878Clytia hemisphaericaexon
TCONS_00038398-exon-sc0001842-1491911889:3405..3477TCONS_00038398-exon-sc0001842-1491911889:3405..3477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001842supercontigsc0001842:3405..3878 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00038398 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.672e-16
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:    2 DTFEGAFFRAVLQIHKNQFVRAQSCIDNARDMLDTELTAMVGESYNRA 145
            DT +GAF+RAVL +H++ F  AQ CID ARD+LD ELTAM GESY+RA
Sbjct: 1539 DTHDGAFYRAVLALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRA 1586
The following BLAST results are available for this feature:
BLAST of TCONS_00038398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTOR1.672e-1666.67Serine/threonine-protein kinase mTOR OS=Homo sapie... [more]
back to top