TCONS_00038394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038394
Unique NameTCONS_00038394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038394 ID=TCONS_00038394|Name=TCONS_00038394|organism=Clytia hemisphaerica|type=transcript|length=647bp
TNCGCGGTGCATCGTatctttttctttggttttgccCTACCCATGGACAT
TGTTATGGTGCCCATATTGTCAATGGACAAGAAGGAAGGAAGGATGCAGC
CTGCTCCCTTTTTACTCATCTTGAAATCCCACctgaaatgattttttacg
aCTTTGCATGTTCGTTGGAGGAATATACTTTGAATCGAGAGGCCGAGTAT
TTTCGTATGTGTCGCTTCTATCATGACCTTTTCCATGGTCCTGCTCATTC
TTGCTCGTCTATGTTTAATGGCAGAGGCTTGGAGGGTATGATGCAATACA
ACACAAGCATTTGTGAGCAATTCAACTCTTTCCTTCAATGCATCAAAGCA
TCTGGAAAACATATTATCCAGCAGCACTTTGTTTTCTTTACGCAATTCAT
GATTGACATTTGGAACACTAAAAAGTATGAATCTTTTGCAACGAAACTCA
AAGTTGCACTTTCTTGCTCTAAGGCTTAAAAAACATTATTTCGAAACAAA
TaaacattatttttaaatttagttaTACACTTTCTAAATATTAATTGTGG
TATACTTTAGTGATTTATAAATGTCTGGTTAAGAATAAGCTTGCTAAAAA
TTAATAGTTTAAAAAGTCTACAACATTTATAATCGGCGAAAGGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00038394-protein

>TCONS_00038394-protein ID=TCONS_00038394-protein|Name=TCONS_00038394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
RGASYLFLWFCPTHGHCYGAHIVNGQEGRKDAACSLFTHLEIPPEMIFYD
FACSLEEYTLNREAEYFRMCRFYHDLFHGPAHSCSSMFNGRGLEGMMQYN
TSICEQFNSFLQCIKASGKHIIQQHFVFFTQFMIDIWNTKKYESFATKLK
VALSCSKA
Run BLAST on NCBI

transcript from alignment at sc0001839:14436..15082

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038394 ID=TCONS_00038394|Name=TCONS_00038394|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at sc0001839:14436..15082 (Clytia hemisphaerica)
AAAACCTTTCGCCGATTATAAATGTTGTAGACTTTTTAAACTATTAATTT
TTAGCAAGCTTATTCTTAACCAGACATTTATAAATCACTAAAGTATACCA
CAATTAATATTTAGAAAGTGTAtaactaaatttaaaaataatgtttATTT
GTTTCGAAATAATGTTTTTTAAGCCTTAGAGCAAGAAAGTGCAACTTTGA
GTTTCGTTGCAAAAGATTCATACTTTTTAGTGTTCCAAATGTCAATCATG
AATTGCGTAAAGAAAACAAAGTGCTGCTGGATAATATGTTTTCCAGATGC
TTTGATGCATTGAAGGAAAGAGTTGAATTGCTCACAAATGCTTGTGTTGT
ATTGCATCATACCCTCCAAGCCTCTGCCATTAAACATAGACGAGCAAGAA
TGAGCAGGACCATGGAAAAGGTCATGATAGAAGCGACACATACGAAAATA
CTCGGCCTCTCGATTCAAAGTATATTCCTCCAACGAACATGCAAAGtcgt
aaaaaatcatttcagGTGGGATTTCAAGATGAGTAAAAAGGGAGCAGGCT
GCATCCTTCCTTCCTTCTTGTCCATTGACAATATGGGCACCATAACAATG
TCCATGGGTAGggcaaaaccaaagaaaaagatACGATGCACCGCGNA

Coding sequence (CDS) from alignment at sc0001839:14436..15082

>TCONS_00038394 ID=TCONS_00038394|Name=TCONS_00038394|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001839:14436..15082 (Clytia hemisphaerica)
TTAAGCCTTAGAGCAAGAAAGTGCAACTTTGAGTTTCGTTGCAAAAGATT
CATACTTTTTAGTGTTCCAAATGTCAATCATGAATTGCGTAAAGAAAACA
AAGTGCTGCTGGATAATATGTTTTCCAGATGCTTTGATGCATTGAAGGAA
AGAGTTGAATTGCTCACAAATGCTTGTGTTGTATTGCATCATACCCTCCA
AGCCTCTGCCATTAAACATAGACGAGCAAGAATGAGCAGGACCATGGAAA
AGGTCATGATAGAAGCGACACATACGAAAATACTCGGCCTCTCGATTCAA
AGTATATTCCTCCAACGAACATGCAAAGtcgtaaaaaatcatttcagGTG
GGATTTCAAGATGAGTAAAAAGGGAGCAGGCTGCATCCTTCCTTCCTTCT
TGTCCATTGACAATATGGGCACCATAACAATGTCCATGGGTAGggcaaaa
ccaaagaaaaagatACGATGCACCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022988XLOC_022988Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038394-proteinTCONS_00038394-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038394-exon-sc0001839-1491911889:14436..15082TCONS_00038394-exon-sc0001839-1491911889:14436..15082Clytia hemisphaericaexon
TCONS_00038394-exon-sc0001839-1510915933:14436..15082TCONS_00038394-exon-sc0001839-1510915933:14436..15082Clytia hemisphaericaexon
TCONS_00038394-exon-sc0001839-1575043694:14436..15082TCONS_00038394-exon-sc0001839-1575043694:14436..15082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:14436..15082 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.77897	4.3443	0.641982	0.628079	3.49543	3.28004	6.35239	6.82446	13.8561	10.0611	13.7046	18.1256	8.99632	10.2938	9.93473	13.5737	10.2762	14.3346	11.1074	4.68529	12.687	9.51161	5.57234	6.16371	5.73972	6.28678	8.44104	3.08186	5.75379	5.03783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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