TCONS_00038388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038388
Unique NameTCONS_00038388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038388 ID=TCONS_00038388|Name=TCONS_00038388|organism=Clytia hemisphaerica|type=transcript|length=3091bp
TTATTTGCCTCCTATTTCACTATGAATTAAGTCACACCGTTGCTCAGTac
tcattttacttttttgtttcttagcCTGTAGGTCTACGTCAGCTTTACTG
CCAATATAATATAGAATTTTATACAGTGTATAATTTTGTTTATAGAACCT
GAGCTGCTTTACTAAAAGGATTCAGTGTTTTCCAAGAAATTAAGTCGAGG
AATCCGAAAAGGTCCTATCTGAAAAATCTGAAAGTGAATGACCACTTAAA
TCTTCTTTtattttcgatcaaattatTTGCAATAAGGGATTCTTTCACTC
CTATATTTCCTCCTGGTTAAGGGTGACATAATCAAACAGGGTAGCTGCAC
AGTGTGTTATTGTTTGATAACATTTTCTGGTCAATTCAAAAAGTATGATC
AAAACAACCTGACTTACAAAAttgtaatttcaaaaaaacctAATAAAAGT
AATGTCATGCATAAATCAATTGCATAATGATTTCTCTGATATTGCCTTTT
AGCAACTTCTGAGTGGTAACTTCACCAAAATCATTtgtgtgatttgaaaa
tagTTGACCAAGAGAACAATCATTATTTCATGGAACTTGGTTAAATACAC
ATTCTGTTTAATTGATATTTTACAGCTTTTGATGGTCTGGGATTAGGAGC
TGATGATCATTACCCAGAGCGTATAAAAGTTACCTCAAACATAGGTAAAT
AATCCTTATATATATGTAAGGAAAACTAGACTCAAACCTTGAAAAATCCT
AAACATTTCCAAACCATTTTTACTTTCTGACTGACAAACCATTTATTATA
CTTCCCAACAGTTTCAACAAGATACTACCTTCTGAAGCTGTCTTTGAATG
TAAATAAGAGATAtacttttctatttctatttggttgagttgcaggaggc
tttaaggcctattttcgcaactatagacactttcaatgagcgcccgtcag
caccttggactgactacccaattcccctcacatggcatgggttaacCCGG
gggaaggttcattcacttgccaagtaaaCCCcagcgagtgggaatcgaac
ctcagtcgcctgtgtaacaaccaaggtcaatgaccactataccacagctc
CTTAAACAAGAGAAGGAAAGGAAAATTGTATCCAAGTTAATAATTCCTAT
TGTATGTATCCAATTATATGAATTAAATTGGTTGCTGCCATTTGTTTTAG
TAACAGCCAAGAAGATGATGTgcaccaaaaataaattttaaaaaaatgat
caaaatcaaATGCCGGATGTGGGACGGATTGATGAACGACAAACAACTAT
GATTATGCATTTAAGTCCAATCAAGGCCATCCaattaatcaattttaaaa
aagagggaaaaacTTTTGATTCATCTGAAAAAAGCATTTGTATTGTATCT
ATATTGACCATTTTAATGGACCTTTTCTAGCATCATGGTGTTGGCTGGAT
TACATAAATTTCAGGATTTAGTcaaatgttttcctttttttttccttttt
ggttTAGTTACAGGAGGCTATTCAGCCTATTCTTGTAACTGTGTTAACAC
GATTAAGCATCCTGTCAGCAACCCTGGACTGACTACTCAATtgccctcac
atggcatgggttgacctggCTGAAGGTTCGTTCATATGCCGTTATGAGTG
GGAATCAAACTTTGGTCTCCcgtacaggaatcaaggttgatgagCACTGT
ACCCCGGCGCCTTTTTAATAAGATAGGACAAAGGTTGTCAATATAAACAT
CAATTAAAGTTTATCAGAATTATAAATTGCTAATTACATCACATAGTAGT
TGGTATATTTCACATTCATGAATCAGAATTTTTTGTTGTACTGTTGTCAA
AAAAAGTAACCAGGCAATGTCAATGAAACTGTATACCATTAACTAATAGA
ACTTTATGGAATGTAATTGAAAGATACCATGaaagtgggtaacttgcatc
attggagGTGTTCATTTCAATCTAGCTAACTGTATTTTTATACAACTTTA
GGCCTGTAGGTAGGCCCATTTTCGCCACATAATTACCAAACCAAATTGAA
GAGTAATTGAACCAAGAAATTCTGGTAAAGTTCCATTGGGCTGTTGCAGA
AAAAAAGCATATTATCCCCTAGTGGATGacacaaattttaaaaatcacat
TTGTTAAGTAACTTCAGCCAACTTTTAAGCAAAAGATATCAGAATTCCAT
AAATTTCACCCAATTTTGTGGCCgaagtatcggaattccatgaattttta
ggaatttttgggattttacaaCAGAAATTCTGCAactttttctaaacttt
ttgctaAGGAAATTCCATGCCCACTAGAGGATAATAAACTAAAACTGGAA
CAGCACATTACTCTTCGATAGTAATCTGATAacagttcgattggttcgat
atTTATTCAATCAGATTCAATCGCAGTTCGATGTGCTTGATTTTGATCAC
CTGAAATCCAGATtatatgattgttttctgccctaCATGTTGAAGCATGA
GGCTTTCAGCGGCacctctgatcacgcaatcacatCAATTACAATTAATT
TTTAATATCCTAACTGTAATACAACTTAATCGAATTAATCAAGAGGTTTT
TGCGGTAAAGTTCGATAGGTTCCATCCGTCGTTCCCAAGCGTCGTTCCCA
AGCGTTCAAAAGAATTTGATGGTCTAATTACAAAAATCAGTTCAATAAGG
TTCAAATGACATCACCTGGAAGTAAATAAAGGTGAACAATATAAAATACA
GTCAATATTCCAACCCCACCCTGGCCGATCAAACCACTCAGACATCTGAT
GCTGACCAATCAATATTGCATCATTCAGAAATGAAATTTAATTACAACTA
AAATATGTTCAAGTGAAATCACAGCAGAGCATTTGAAAGAGCAGTGATGT
GACTTGACTAGTGATTCAACTGGTGccatttttttattcatttaacGCAA
ACGCTCACTGTGGCAAATTGACCATATATGGAAAATAGTCTATATTTAGC
ACAGCAATAAAACGAGCCGTAACACACCACAACGAAGGTTTGTTTGCTAT
CAAGCACCTGTATAAGTGtagtgaaaactttttgaaaggaG
Run BLAST on NCBI

transcript from alignment at sc0001839:2491..5778-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038388 ID=TCONS_00038388|Name=TCONS_00038388|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at sc0001839:2491..5778- (Clytia hemisphaerica)
TTATTTGCCTCCTATTTCACTATGAATTAAGTCACACCGTTGCTCAGTAC
TCATTTTACTTTTTTGTTTCTTAGCCTGTAGGTCTACGTCAGCTTTACTG
CCAATATAATATAGAATTTTATACAGTGTATAATTTTGTTTATAGAACCT
GAGCTGCTTTACTAAAAGGATTCAGTGTTTTCCAAGAAATTAAGTCGAGG
AATCCGAAAAGGTCCTATCTGAAAAATCTGAAAGTGAATGACCACTTAAA
TCTTCTTTTATTTTCGATCAAATTATTTGCAATAAGGGATTCTTTCACTC
CTATATTTCCTCCTGGTTAAGGGTGACATAATCAAACAGGGTAGCTGCAC
AGTGTGTTATTGTTTGATAACATTTTCTGGTCAATTCAAAAAGTATGATC
AAAACAACCTGACTTACAAAATTGTAATTTCAAAAAAACCTAATAAAAGT
AATGTCATGCATAAATCAATTGCATAATGATTTCTCTGATATTGCCTTTT
AGCAACTTCTGAGTGGTAACTTCACCAAAATCATTTGTGTGATTTGAAAA
TAGTTGACCAAGAGAACAATCATTATTTCATGGAACTTGGTTAAATACAC
ATTCTGTTTAATTGATATTTTACAGCTTTTGATGGTCTGGGATTAGGAGC
TGATGATCATTACCCAGAGCGTATAAAAGTTACCTCAAACATAGGTAAAT
AATCCTTATATATATGTAAGGAAAACTAGACTCAAACCTTGAAAAATCCT
AAACATTTCCAAACCATTTTTACTTTCTGACTGACAAACCATTTATTATA
CTTCCCAACAGTTTCAACAAGATACTACCTTCTGAAGCTGTCTTTGAATG
TAAATAAGAGATATACTTTTCTATTTCTATTTGGTTGAGTTGCAGGAGGC
TTTAAGGCCTATTTTCGCAACTATAGACACTTTCAATGAGCGCCCGTCAG
CACCTTGGACTGACTACCCAATTCCCCTCACATGGCATGGGTTAACCCGG
GGGAAGGTTCATTCACTTGCCAAGTAAACCCCAGCGAGTGGGAATCGAAC
CTCAGTCGCCTGTGTAACAACCAAGGTCAATGACCACTATACCACAGCTC
CTTAAACAAGAGAAGGAAAGGAAAATTGTATCCAAGTTAATAATTCCTAT
TGTATGTATCCAATTATATGAATTAAATTGGTTGCTGCCATTTGTTTTAG
TAACAGCCAAGAAGATGATGTGCACCAAAAATAAATTTTAAAAAAATGAT
CAAAATCAAATGCCGGATGTGGGACGGATTGATGAACGACAAACAACTAT
GATTATGCATTTAAGTCCAATCAAGGCCATCCAATTAATCAATTTTAAAA
AAGAGGGAAAAACTTTTGATTCATCTGAAAAAAGCATTTGTATTGTATCT
ATATTGACCATTTTAATGGACCTTTTCTAGCATCATGGTGTTGGCTGGAT
TACATAAATTTCAGGATTTAGTCAAATGTTTTCCTTTTTTTTTCCTTTTT
GGTTTAGTTACAGGAGGCTATTCAGCCTATTCTTGTAACTGTGTTAACAC
GATTAAGCATCCTGTCAGCAACCCTGGACTGACTACTCAATTGCCCTCAC
ATGGCATGGGTTGACCTGGCTGAAGGTTCGTTCATATGCCGTTATGAGTG
GGAATCAAACTTTGGTCTCCCGTACAGGAATCAAGGTTGATGAGCACTGT
ACCCCGGCGCCTTTTTAATAAGATAGGACAAAGGTTGTCAATATAAACAT
CAATTAAAGTTTATCAGAATTATAAATTGCTAATTACATCACATAGTAGT
TGGTATATTTCACATTCATGAATCAGAATTTTTTGTTGTACTGTTGTCAA
AAAAAGTAACCAGGCAATGTCAATGAAACTGTATACCATTAACTAATAGA
ACTTTATGGAATGTAATTGAAAGATACCATGAAAGTGGGTAACTTGCATC
ATTGGAGGCTAACATGCATAGCCCTCAAATGACTGACCAATCAAAGCAGC
AAAATTTCAAAACAAATGAATTACGCAGCTCAGCTCGCAGCTCTACTCTA
CCATTTTTGTTTTGATTTAACTTTGTATTTTAAGGACCAGCCAGGTCATT
TGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCGACTTCACA
GTAGGTGTTCATTTCAATCTAGCTAACTGTATTTTTATACAACTTTAGGC
CTGTAGGTAGGCCCATTTTCGCCACATAATTACCAAACCAAATTGAAGAG
TAATTGAACCAAGAAATTCTGGTAAAGTTCCATTGGGCTGTTGCAGAAAA
AAAGCATATTATCCCCTAGTGGATGACACAAATTTTAAAAATCACATTTG
TTAAGTAACTTCAGCCAACTTTTAAGCAAAAGATATCAGAATTCCATAAA
TTTCACCCAATTTTGTGGCCGAAGTATCGGAATTCCATGAATTTTTAGGA
ATTTTTGGGATTTTACAACAGAAATTCTGCAACTTTTTCTAAACTTTTTG
CTAAGGAAATTCCATGCCCACTAGAGGATAATAAACTAAAACTGGAACAG
CACATTACTCTTCGATAGTAATCTGATAACAGTTCGATTGGTTCGATATT
TATTCAATCAGATTCAATCGCAGTTCGATGTGCTTGATTTTGATCACCTG
AAATCCAGATTATATGATTGTTTTCTGCCCTACATGTTGAAGCATGAGGC
TTTCAGCGGCACCTCTGATCACGCAATCACATCAATTACAATTAATTTTT
AATATCCTAACTGTAATACAACTTAATCGAATTAATCAAGAGGTTTTTGC
GGTAAAGTTCGATAGGTTCCATCCGTCGTTCCCAAGCGTCGTTCCCAAGC
GTTCAAAAGAATTTGATGGTCTAATTACAAAAATCAGTTCAATAAGGTTC
AAATGACATCACCTGGAAGTAAATAAAGGTGAACAATATAAAATACAGTC
AATATTCCAACCCCACCCTGGCCGATCAAACCACTCAGACATCTGATGCT
GACCAATCAATATTGCATCATTCAGAAATGAAATTTAATTACAACTAAAA
TATGTTCAAGTGAAATCACAGCAGAGCATTTGAAAGAGCAGTGATGTGAC
TTGACTAGTGATTCAACTGGTGCCATTTTTTTATTCATTTAACGCAAACG
CTCACTGTGGCAAATTGACCATATATGGAAAATAGTCTATATTTAGCACA
GCAATAAAACGAGCCGTAACACACCACAACGAAGGTTTGTTTGCTATCAA
GCACCTGTATAAGTGTAGTGAAAACTTTTTGAAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022984XLOC_022984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038388-exon-sc0001839-1575043694:3822..5778TCONS_00038388-exon-sc0001839-1575043694:3822..5778Clytia hemisphaericaexon
TCONS_00038388-exon-sc0001839-1575043694:2491..3624TCONS_00038388-exon-sc0001839-1575043694:2491..3624Clytia hemisphaericaexon
TCONS_00038388-exon-sc0001839-1510915933:3822..5778TCONS_00038388-exon-sc0001839-1510915933:3822..5778Clytia hemisphaericaexon
TCONS_00038388-exon-sc0001839-1510915933:2491..3624TCONS_00038388-exon-sc0001839-1510915933:2491..3624Clytia hemisphaericaexon
TCONS_00038388-exon-sc0001839-1491911889:3822..5778TCONS_00038388-exon-sc0001839-1491911889:3822..5778Clytia hemisphaericaexon
TCONS_00038388-exon-sc0001839-1491911889:2491..3624TCONS_00038388-exon-sc0001839-1491911889:2491..3624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:2491..5778 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.407313	0.3444	0.64583	0.68761	1.36758	0.856688	1.68177	1.69718	2.35802	1.67106	1.76347	2.66309	1.69793	2.35739	1.18282	1.00224	0.769392	1.35643	1.53713	1.21861	2.45797	2.28621	0.713459	1.0646	1.59707	1.83357	1.8943	1.38357	1.31546	1.33731
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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