TCONS_00038378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038378
Unique NameTCONS_00038378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038378 ID=TCONS_00038378|Name=TCONS_00038378|organism=Clytia hemisphaerica|type=transcript|length=268bp
TATTTTGAATAAGGATTCTGAAAGAAACATTAGTATGTGTGTTGTTCCAG
TtatattacgtcatgaattgTCTAAATCTGACATTGTTACATTTGCTGTG
TTGACAATTGTTCACAAGCTTCCTTCATTTCTGAAGATATTTTATCAATG
TATCGACACCAACTATTTGAGAAAATAGTCAGAGAGAAATTGCAAATCCA
CCTTGAAGAAAACAACCTATACAATCCAACACAACATGGTTTCAGACCAG
GGCGATCTTGCTTGAGNN
Run BLAST on NCBI

transcript from alignment at sc0001838:10751..11018

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038378 ID=TCONS_00038378|Name=TCONS_00038378|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0001838:10751..11018 (Clytia hemisphaerica)
NNCTCAAGCAAGATCGCCCTGGTCTGAAACCATGTTGTGTTGGATTGTAT
AGGTTGTTTTCTTCAAGGTGGATTTGCAATTTCTCTCTGACTATTTTCTC
AAATAGTTGGTGTCGATACATTGATAAAATATCTTCAGAAATGAAGGAAG
CTTGTGAACAATTGTCAACACAGCAAATGTAACAATGTCAGATTTAGAca
attcatgacgtaatataACTGGAACAACACACATACTAATGTTTCTTTCA
GAATCCTTATTCAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022982XLOC_022982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038378-exon-sc0001838-1491911889:10751..11018TCONS_00038378-exon-sc0001838-1491911889:10751..11018Clytia hemisphaericaexon
TCONS_00038378-exon-sc0001838-1510915933:10751..11018TCONS_00038378-exon-sc0001838-1510915933:10751..11018Clytia hemisphaericaexon
TCONS_00038378-exon-sc0001838-1575043694:10751..11018TCONS_00038378-exon-sc0001838-1575043694:10751..11018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001838supercontigsc0001838:10751..11018 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2433	6.81184	4.38936	6.74833	8.65102	6.21468	14.098	7.01931	5.65196	5.92499	7.09012	5.55161	6.4178	2.41676	1.5809	2.74175	0.437794	2.64943	6.06995	12.343	4.59573	5.60406	0	2.10007	5.63525	12.8527	13.5545	12.5251	13.9397	8.57138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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