TCONS_00038372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038372
Unique NameTCONS_00038372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038372 ID=TCONS_00038372|Name=TCONS_00038372|organism=Clytia hemisphaerica|type=transcript|length=782bp
TGTTGCTAAAGGCATTACACACCATTTCCGTATGAGGGCCCCATGATAGT
TTATTGTCAAGAATCACACCAAGACATTTTGTTTTGTCAGTTATTTTGAT
GTTTGTTGATCTTAACATCTGGTAGGGGACCAATGAACTTCTGTTTGCTT
AATATCAATATTTGACATTTATCTGGATGGATTGTAAGACAGTTCTCTAA
CGAATAATTAGCAATTAGTTCTATTTGTTTTTACAAGTTAATCATTACTT
CGTCAACAGTGTCAGCTATCGAGTAAGTCTCAGAGTCATCTGCATATAGG
TCGATTTTCTCATCTCCAACATCTGGCATGTCATTCNACGAATAATTAGC
AATTAGTTCTATTTGTTTTTGCAAGTTAATCATTACTTCGTCAACAGTGT
CAGCTATCGAGTAAGTCTCAGAGTCATCTGCATATAGGTCGATTTTCTCA
TCTCCAACATCTGGCATGTCATTTACGTACATTGAGAAACATTGAGGTCC
AAGTGTCTATCCCTGAGGAACGCCGTATTCAACAGAGGATTTGGTCGATG
TAACTCCATTCACTTTGGTGATTTGGTGATCTTTCTTTGAGGTAGCTCAT
CATGAATTCGAGGAAATCCCCCGACACCCACATGCAGAGAGTTTATTCAA
TAGTACTTCATGAGACACACTGTCAAAAGCCTTCTTAAAGTCAATCATAA
GTATTCCTATAACCCTTTTGTCATCTAAGGCTTTATACCATGTTTCAGTC
AAGTATAATAGTAGATCTTCAGTTGATCTAGC
Run BLAST on NCBI

transcript from alignment at sc0001837:31568..32349

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038372 ID=TCONS_00038372|Name=TCONS_00038372|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at sc0001837:31568..32349 (Clytia hemisphaerica)
GCTAGATCAACTGAAGATCTACTATTATACTTGACTGAAACATGGTATAA
AGCCTTAGATGACAAAAGGGTTATAGGAATACTTATGATTGACTTTAAGA
AGGCTTTTGACAGTGTGTCTCATGAAGTACTATTGAATAAACTCTCTGCA
TGTGGGTGTCGGGGGATTTCCTCGAATTCATGATGAGCTACCTCAAAGAA
AGATCACCAAATCACCAAAGTGAATGGAGTTACATCGACCAAATCCTCTG
TTGAATACGGCGTTCCTCAGGGATAGACACTTGGACCTCAATGTTTCTCA
ATGTACGTAAATGACATGCCAGATGTTGGAGATGAGAAAATCGACCTATA
TGCAGATGACTCTGAGACTTACTCGATAGCTGACACTGTTGACGAAGTAA
TGATTAACTTGCAAAAACAAATAGAACTAATTGCTAATTATTCGTNGAAT
GACATGCCAGATGTTGGAGATGAGAAAATCGACCTATATGCAGATGACTC
TGAGACTTACTCGATAGCTGACACTGTTGACGAAGTAATGATTAACTTGT
AAAAACAAATAGAACTAATTGCTAATTATTCGTTAGAGAACTGTCTTACA
ATCCATCCAGATAAATGTCAAATATTGATATTAAGCAAACAGAAGTTCAT
TGGTCCCCTACCAGATGTTAAGATCAACAAACATCAAAATAACTGACAAA
ACAAAATGTCTTGGTGTGATTCTTGACAATAAACTATCATGGGGCCCTCA
TACGGAAATGGTGTGTAATGCCTTTAGCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022976XLOC_022976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038372-exon-sc0001837-1491911889:31568..32349TCONS_00038372-exon-sc0001837-1491911889:31568..32349Clytia hemisphaericaexon
TCONS_00038372-exon-sc0001837-1510915933:31568..32349TCONS_00038372-exon-sc0001837-1510915933:31568..32349Clytia hemisphaericaexon
TCONS_00038372-exon-sc0001837-1575043694:31568..32349TCONS_00038372-exon-sc0001837-1575043694:31568..32349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001837supercontigsc0001837:31568..32349 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2029	0.784909	1.26188	1.09738	1.50294	0.725784	0.95523	1.04332	0.678278	1.16329	1.19185	0.824711	1.44124	1.79609	0.527367	0.490487	0.697199	0.762247	1.25054	0.75761	0.598637	1.13878	0.425948	0.709957	0.930667	1.6612	0.594292	0.453032	0	0.0700165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top