TCONS_00038367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038367
Unique NameTCONS_00038367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038367 ID=TCONS_00038367|Name=TCONS_00038367|organism=Clytia hemisphaerica|type=transcript|length=363bp
GTGTATAGACATGCACActtctttatattttcttttgtctATTGTTTACA
TATAATTGGTTTATAATTGGTTTATAATTAGGAATAGGAATGAGAGATGT
ATAAAAGAGCTTTGATGTTACATGATCAGTTGTGTTACAAATGTTGTCAA
GTAAAGACATCAAGTGGTGAATAAAGTGAAATTCACTAGTTCAAAGTTGG
ACAAAAttatgttttgatgttttgattttatggTAATACACCTTGATACA
TGCTGGCTTCCTAGCATATTTACACATCTTGCttaCCTTTCTTGAAAGAT
ATCAGTTTATCGGACGAGAACGAGTAATTTACTGTGGTTCATAAGTTTGC
TGCCGCAACAGAA
Run BLAST on NCBI

transcript from alignment at sc0001837:19847..20420-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038367 ID=TCONS_00038367|Name=TCONS_00038367|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0001837:19847..20420- (Clytia hemisphaerica)
GTGTATAGACATGCACACTTCTTTATATTTTCTTTTGTCTATTGTTTACA
TATAATTGGTTTATAATTGGTTTATAATTAGGAATAGGAATGAGAGATGT
ATAAAAGAGCTTTGATGTTACATGATCAGTTGTGTTACAAATGTTGTCAA
GTAAAGACATCAAGTGGTGAATAAAGTGAAATTCACTAGTTCAAAGTTGG
ACAAAATTATGTTTTGATGTTTTGATTTTATGGTAATACACCTTGATACA
TGCTGGCTTCCTAGCATATTTACACATCTTGCTTAGTAAGTATTTATTTA
TTAATACTTAATATATTTTTGACTTCATTTGTGCTTGTGCATAGCTATTA
AATTATTTTGCATACATATTCATTTAGCCTTAGCCCTAGCCTTCTATATT
CTTGACTTAGTTTATACACACTCACATAGTCTTTGTATTTTTCTATTTTG
TTTCAAGTATATTTTTCTAAATTCAGTTTTTGTACTTTTATTTTAGCCTT
TCTTGAAAGATATCAGTTTATCGGACGAGAACGAGTAATTTACTGTGGTT
CATAAGTTTGCTGCCGCAACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022972XLOC_022972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038367-exon-sc0001837-1575043694:20136..20420TCONS_00038367-exon-sc0001837-1575043694:20136..20420Clytia hemisphaericaexon
TCONS_00038367-exon-sc0001837-1575043694:19847..19924TCONS_00038367-exon-sc0001837-1575043694:19847..19924Clytia hemisphaericaexon
TCONS_00038367-exon-sc0001837-1510915933:20136..20420TCONS_00038367-exon-sc0001837-1510915933:20136..20420Clytia hemisphaericaexon
TCONS_00038367-exon-sc0001837-1510915933:19847..19924TCONS_00038367-exon-sc0001837-1510915933:19847..19924Clytia hemisphaericaexon
TCONS_00038367-exon-sc0001837-1491911889:20136..20420TCONS_00038367-exon-sc0001837-1491911889:20136..20420Clytia hemisphaericaexon
TCONS_00038367-exon-sc0001837-1491911889:19847..19924TCONS_00038367-exon-sc0001837-1491911889:19847..19924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001837supercontigsc0001837:19847..20420 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22589	1.27587	1.22815	0	15.1409	5.9336	3.85322	2.75761	0	1.10388	2.42017	0.822065	0.823768	0	0	0.664416	0	0.353304	0.521921	0	0.632469	1.83367	2.50755	0.0888777	0	0.408547	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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