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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038360 ID=TCONS_00038360|Name=TCONS_00038360|organism=Clytia hemisphaerica|type=transcript|length=2241bp
CTGAATCGGGGtacaaaaaaacaagcaaaacttTGGAAGTGAGATCTTCT
CACTACTCAACTTCCACTCTGCTCTAGTTCAGTTCCTGTTTTTCTTCAAC
ACCACGTTCTATGTCTTTTTAACTCAATTACAATTATTATGGATGAGTTC
ACCAGTGAGAATATAATTGATTTTGACGATGCTGATTATAATCAAGAAGA
AATGGAGGAACTTTTCTTTGTTACTGAAAACAGTGGAAAAGTCTACTTTG
AGATTGAGTTAAAAGAGGATGATCAACAAACTATATGTGGCAATNGACTT
TGAGATTGAGCTCACAGAGGATGATCAACAAACTCTATGTGGCAATGTAG
ATGCTACAGTATCAACGATACCCCCAATCACCTTTGTAGACGACAGAGAC
GTGGATTTGCTAGACGTCCCAGCAATAAAATTTTGCCCAGACCCTGATGC
CAACAAAGTTATTAAAGATGTTTTTATTTGCAGATGGTGCAAGGAAACGT
TCAGCACTAACACAACAAGGAATAACCACACAGGCAAATGTTTCCAAAAC
CCAGCGCGGAGAACAAAGCAAGGACACAAAATTGtgCTAAATCGACAAGA
GCTGGTACCCTTACAAGCAGAAGCAGGGAATCATTTCTCAATAGCATTGG
ATTTGGCAATCAATGATAAGATCCTAAACCTCAGACATGAAGAAGTGCTG
ACTCCAGGAAATTATGCCGTTAAATCAGCGAAAATAATACAGGAGAAATC
TGAGAGTGTTTCCAAAGAAATCTCAGATTTTGCTGCACACATTCAAGACC
TTTTAATCCCCTGTGTGAACACCGACTACTGTTCAGAGGCTAGACAAATA
GGATGCACAAAGTTTTCTCAAGTCAGTGTTAGCAAATCCGGAAGGAGTAA
ATTCAGGGCAATATTCGATAAGCTACAATTGAACGAAGGATTTGATATTC
TTTACACCTTCATGGTaacaaaaacattatctttGATTCTGAAATGGAAA
AACGATAAACTCATTGAAATCTCTGAAGTTGACCATACTAAACTAAGCTT
ATCACCTGAAGAGGAAAAGGTCCTCAGATATGTGAGTGGTTTTATTCCCT
ATTCcctcaaaaaaaggttttcacGGGTGAAAGAGTCGAATCTTAAGAGG
GCTGCTCTTCAAGTAGTCAATGCATGGTGTCTTGATGGTGACAATGAAGA
TACAAGTGATTTTTACGAGTATACGCTATCATGGACAAATCGAATAAATC
GTGGGGGATTGATGATTGTGAAAGAACCTTTTTATGTGTTCATAAAAAGA
ATCGAGATAGCTGTACGTGAAGTCTTGAATGTTGCATTAATCGAAAATTA
CCGTGGAGAGGACTTGAGAGACCTGATTTTAGAGAAGCTCATGAAAAGCA
CCTTCATTGAAGGTACATGGGCCTCATTAAGCAGGATGATTCTGAATGAA
AAACTTAGAGTCATGTTgaaggaaaaatttttgaaaaaatgggtCAATTT
ACGCANAAATGAAAAACTTAGAGCCATGTTGAaggaaataattttgaaaa
aatgggtCAATTTACGCATACGATCCTTTGTTACAGCATGGATTCAAGCT
GCTAAACTAAAACAAACTgagaataaaatttctaaaaaagctGAAGTGTC
TTTGAGAAAAGGTCTTAGTACCTAAATTCTCATATGAATCTGAGACTTTT
CCATATATTCCGTATATAGCTATAATtatcttttagagcaaaaataTTGT
ATTATTTCTATCTTCTGATTGCATCGATTGTGTCCccttttgttactttt
ttatcatgaaaatttcCTAAATTTCTTTCAGAGCTGATACTTTATCTGCC
AAAGATTACTCCCATAACCTTGGGTTTGGTGATCTTTTGCTAATATTGAC
AAGATGTAATTTGTAGTCTAATTCTGGATTTTCCTGGCCAAAAGAAAGAT
CACTTTAGGAACTGTTAGGGTTACATTTTGGttgatagaatttttttcac
tcttTTGAATCAGACCCGTGTATTTTATTTTACTCTTTGTCAGTTATTAT
TTTTCAAGTTATCTGGTAGTAATGAAATGGTTTGAGAATTTTAATTGTTC
ATGCCTTTTTAGTGCAAGGTGCGGAGGGACTTTTACCATACtgtatttca
agcaaaaaaaagaagttttcatttttttactcTCCTTTTCGAAATGATCT
GACTATTTGAAAACTTTAGAAGTGAGATTTTGTAAGAACAT Run BLAST on NCBI protein sequence of TCONS_00038360-protein >TCONS_00038360-protein ID=TCONS_00038360-protein|Name=TCONS_00038360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MINKLYVAXDFEIELTEDDQQTLCGNVDATVSTIPPITFVDDRDVDLLDV
PAIKFCPDPDANKVIKDVFICRWCKETFSTNTTRNNHTGKCFQNPARRTK
QGHKIVLNRQELVPLQAEAGNHFSIALDLAINDKILNLRHEEVLTPGNYA
VKSAKIIQEKSESVSKEISDFAAHIQDLLIPCVNTDYCSEARQIGCTKFS
QVSVSKSGRSKFRAIFDKLQLNEGFDILYTFMVTKTLSLILKWKNDKLIE
ISEVDHTKLSLSPEEEKVLRYVSGFIPYSLKKRFSRVKESNLKRAALQVV
NAWCLDGDNEDTSDFYEYTLSWTNRINRGGLMIVKEPFYVFIKRIEIAVR
EVLNVALIENYRGEDLRDLILEKLMKSTFIEGTWASLSRMILNEKLRVML
KEKFLKKWVNLRXNEKLRAMLKEIILKKWVNLRIRSFVTAWIQAAKLKQT
ENKISKKAEVSLRKGLST Run BLAST on NCBI transcript from alignment at sc0001833:27077..29661+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038360 ID=TCONS_00038360|Name=TCONS_00038360|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at sc0001833:27077..29661+ (Clytia hemisphaerica)
CTGAATCGGGGtacaaaaaaacaagcaaaacttTGGAAGTGAGATCTTCT
CACTACTCAACTTCCACTCTGCTCTAGTTCAGTTCCTGTTTTTCTTCAAC
ACCACGTTCTATGTCTTTTTAACTCAATTACAATTATTATGGATGAGTTC
ACCAGTGAGAATATAATTGATTTTGACGATGCTGATTATAATCAAGAAGA
AATGGAGGAACTTTTCTTTGTTACTGAAAACAGTGGAAAAGTCTACTTTG
AGATTGAGTTAAAAGAGGATGATCAACAAACTATATGTGGCAATNGACTT
TGAGATTGAGCTCACAGAGGATGATCAACAAACTCTATGTGGCAATGTAG
ATGCTACAGTATCAACGATACCCCCAATCACCTTTGTAGACGACAGAGAC
GTGGATTTGCTAGACGTCCCAGCAATAAAATTTTGCCCAGACCCTGATGC
CAACAAAGTTATTAAAGATGTTTTTATTTGCAGATGGTGCAAGGAAACGT
TCAGCACTAACACAACAAGGAATAACCACACAGGCAAATGTTTCCAAAAC
CCAGCGCGGAGAACAAAGCAAGGACACAAAATTGgtaaattaatattttt
tcccTAGAAATATTACTTACTTGGATATATtatattctttaataattaag
gGAGGGCAAGAGTATAATCTAttgttataaataaaagtaaagaaGACATA
TGAGCCAATCATATAATTCACCCCACAAAAATTTCTGATAATATGCTCTA
TGGATATCCTGaacggtgggaaaataccccaaaattattttcattaaagt
cTAGTAAAGGTCTATAAAGGTCTATTCATCTACTTTATGTCTTTCTTACA
TATGTTTCTGTATCATGTTTTTCTGCTTGTTCTCACATAATTAAAAGctt
ccttttaattttttttttccttttttagtgCTAAATCGACAAGAGCTGGT
ACCCTTACAAGCAGAAGCAGGGAATCATTTCTCAATAGCATTGGATTTGG
CAATCAATGATAAGATCCTAAACCTCAGACATGAAGAAGTGCTGACTCCA
GGAAATTATGCCGTTAAATCAGCGAAAATAATACAGGAGAAATCTGAGAG
TGTTTCCAAAGAAATCTCAGATTTTGCTGCACACATTCAAGACCTTTTAA
TCCCCTGTGTGAACACCGACTACTGTTCAGAGGCTAGACAAATAGGATGC
ACAAAGTTTTCTCAAGTCAGTGTTAGCAAATCCGGAAGGAGTAAATTCAG
GGCAATATTCGATAAGCTACAATTGAACGAAGGATTTGATATTCTTTACA
CCTTCATGGTaacaaaaacattatctttGATTCTGAAATGGAAAAACGAT
AAACTCATTGAAATCTCTGAAGTTGACCATACTAAACTAAGCTTATCACC
TGAAGAGGAAAAGGTCCTCAGATATGTGAGTGGTTTTATTCCCTATTCcc
tcaaaaaaaggttttcacGGGTGAAAGAGTCGAATCTTAAGAGGGCTGCT
CTTCAAGTAGTCAATGCATGGTGTCTTGATGGTGACAATGAAGATACAAG
TGATTTTTACGAGTATACGCTATCATGGACAAATCGAATAAATCGTGGGG
GATTGATGATTGTGAAAGAACCTTTTTATGTGTTCATAAAAAGAATCGAG
ATAGCTGTACGTGAAGTCTTGAATGTTGCATTAATCGAAAATTACCGTGG
AGAGGACTTGAGAGACCTGATTTTAGAGAAGCTCATGAAAAGCACCTTCA
TTGAAGGTACATGGGCCTCATTAAGCAGGATGATTCTGAATGAAAAACTT
AGAGTCATGTTgaaggaaaaatttttgaaaaaatgggtCAATTTACGCAN
AAATGAAAAACTTAGAGCCATGTTGAaggaaataattttgaaaaaatggg
tCAATTTACGCATACGATCCTTTGTTACAGCATGGATTCAAGCTGCTAAA
CTAAAACAAACTgagaataaaatttctaaaaaagctGAAGTGTCTTTGAG
AAAAGGTCTTAGTACCTAAATTCTCATATGAATCTGAGACTTTTCCATAT
ATTCCGTATATAGCTATAATtatcttttagagcaaaaataTTGTATTATT
TCTATCTTCTGATTGCATCGATTGTGTCCccttttgttacttttttatca
tgaaaatttcCTAAATTTCTTTCAGAGCTGATACTTTATCTGCCAAAGAT
TACTCCCATAACCTTGGGTTTGGTGATCTTTTGCTAATATTGACAAGATG
TAATTTGTAGTCTAATTCTGGATTTTCCTGGCCAAAAGAAAGATCACTTT
AGGAACTGTTAGGGTTACATTTTGGttgatagaatttttttcactcttTT
GAATCAGACCCGTGTATTTTATTTTACTCTTTGTCAGTTATTATTTTTCA
AGTTATCTGGTAGTAATGAAATGGTTTGAGAATTTTAATTGTTCATGCCT
TTTTAGTGCAAGGTGCGGAGGGACTTTTACCATACtgtatttcaagcaaa
aaaaagaagttttcatttttttactcTCCTTTTCGAAATGATCTGACTAT
TTGAAAACTTTAGAAGTGAGATTTTGTAAGAACAT Coding sequence (CDS) from alignment at sc0001833:27077..29661+ >TCONS_00038360 ID=TCONS_00038360|Name=TCONS_00038360|organism=Clytia hemisphaerica|type=CDS|length=2814bp|location=Sequence derived from alignment at sc0001833:27077..29661+ (Clytia hemisphaerica)
ATGATCAACAAACTATATGTGGCAATNGACTTTGAGATTGAGCTCACAGA
GGATGATCAACAAACTCTATGTGGCAATGTAGATGCTACAGTATCAACGA
TACCCCCAATCACCTTTGTAGACGACAGAGACGTGGATTTGCTAGACGTC
CCAGCAATAAAATTTTGCCCAGACCCTGATGCCAACAAAGTTATTAAAGA
TGTTTTTATTTGCAGATGGTGCAAGGAAACGTTCAGCACTAACACAACAA
GGAATAACCACACAGGCAAATGTTTCCAAAACCCAGCGCGGAGAACAAAG
CAAGGACACAAAATTGtgCTAAATCGACAAGAGCTGGTACCCTTACAAGC
AGAAGCAGGGAATCATTTCTCAATAGCATTGGATTTGGCAATCAATGATA
AGATCCTAAACCTCAGACATGAAGAAGTGCTGACTCCAGGAAATTATGCC
GTTAAATCAGCGAAAATAATACAGGAGAAATCTGAGAGTGTTTCCAAAGA
AATCTCAGATTTTGCTGCACACATTCAAGACCTTTTAATCCCCTGTGTGA
ACACCGACTACTGTTCAGAGGCTAGACAAATAGGATGCACAAAGTTTTCT
CAAGTCAGTGTTAGCAAATCCGGAAGGAGTAAATTCAGGGCAATATTCGA
TAAGCTACAATTGAACGAAGGATTTGATATTCTTTACACCTTCATGGTaa
caaaaacattatctttGATTCTGAAATGGAAAAACGATAAACTCATTGAA
ATCTCTGAAGTTGACCATACTAAACTAAGCTTATCACCTGAAGAGGAAAA
GGTCCTCAGATATGTGAGTGGTTTTATTCCCTATTCcctcaaaaaaaggt
tttcacGGGTGAAAGAGTCGAATCTTAAGAGGGCTGCTCTTCAAGTAGTC
AATGCATGGTGTCTTGATGGTGACAATGAAGATACAAGTGATTTTTACGA
GTATACGCTATCATGGACAAATCGAATAAATCGTGGGGGATTGATGATTG
TGAAAGAACCTTTTTATGTGTTCATAAAAAGAATCGAGATAGCTGTACGT
GAAGTCTTGAATGTTGCATTAATCGAAAATTACCGTGGAGAGGACTTGAG
AGACCTGATTTTAGAGAAGCTCATGAAAAGCACCTTCATTGAAGGTACAT
GGGCCTCATTAAGCAGGATGATTCTGAATGAAAAACTTAGAGTCATGTTg
aaggaaaaatttttgaaaaaatgggtCAATTTACGCANAAATGAAAAACT
TAGAGCCATGTTGAaggaaataattttgaaaaaatgggtCAATTTACGCA
TACGATCCTTTGTTACAGCATGGATTCAAGCTGCTAAACTAAAACAAACT
gagaataaaatttctaaaaaagctGAAGTGTCTTTGAGAAAAGGTCTTAG
TACCTAAATGATCAACAAACTATATGTGGCAATNGACTTTGAGATTGAGC
TCACAGAGGATGATCAACAAACTCTATGTGGCAATGTAGATGCTACAGTA
TCAACGATACCCCCAATCACCTTTGTAGACGACAGAGACGTGGATTTGCT
AGACGTCCCAGCAATAAAATTTTGCCCAGACCCTGATGCCAACAAAGTTA
TTAAAGATGTTTTTATTTGCAGATGGTGCAAGGAAACGTTCAGCACTAAC
ACAACAAGGAATAACCACACAGGCAAATGTTTCCAAAACCCAGCGCGGAG
AACAAAGCAAGGACACAAAATTGtgCTAAATCGACAAGAGCTGGTACCCT
TACAAGCAGAAGCAGGGAATCATTTCTCAATAGCATTGGATTTGGCAATC
AATGATAAGATCCTAAACCTCAGACATGAAGAAGTGCTGACTCCAGGAAA
TTATGCCGTTAAATCAGCGAAAATAATACAGGAGAAATCTGAGAGTGTTT
CCAAAGAAATCTCAGATTTTGCTGCACACATTCAAGACCTTTTAATCCCC
TGTGTGAACACCGACTACTGTTCAGAGGCTAGACAAATAGGATGCACAAA
GTTTTCTCAAGTCAGTGTTAGCAAATCCGGAAGGAGTAAATTCAGGGCAA
TATTCGATAAGCTACAATTGAACGAAGGATTTGATATTCTTTACACCTTC
ATGGTaacaaaaacattatctttGATTCTGAAATGGAAAAACGATAAACT
CATTGAAATCTCTGAAGTTGACCATACTAAACTAAGCTTATCACCTGAAG
AGGAAAAGGTCCTCAGATATGTGAGTGGTTTTATTCCCTATTCcctcaaa
aaaaggttttcacGGGTGAAAGAGTCGAATCTTAAGAGGGCTGCTCTTCA
AGTAGTCAATGCATGGTGTCTTGATGGTGACAATGAAGATACAAGTGATT
TTTACGAGTATACGCTATCATGGACAAATCGAATAAATCGTGGGGGATTG
ATGATTGTGAAAGAACCTTTTTATGTGTTCATAAAAAGAATCGAGATAGC
TGTACGTGAAGTCTTGAATGTTGCATTAATCGAAAATTACCGTGGAGAGG
ACTTGAGAGACCTGATTTTAGAGAAGCTCATGAAAAGCACCTTCATTGAA
GGTACATGGGCCTCATTAAGCAGGATGATTCTGAATGAAAAACTTAGAGT
CATGTTgaaggaaaaatttttgaaaaaatgggtCAATTTACGCANAAATG
AAAAACTTAGAGCCATGTTGAaggaaataattttgaaaaaatgggtCAAT
TTACGCATACGATCCTTTGTTACAGCATGGATTCAAGCTGCTAAACTAAA
ACAAACTgagaataaaatttctaaaaaagctGAAGTGTCTTTGAGAAAAG
GTCTTAGTACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038360-exon-sc0001833-1491911889:27077..27660 | TCONS_00038360-exon-sc0001833-1491911889:27077..27660 | Clytia hemisphaerica | exon |
| TCONS_00038360-exon-sc0001833-1510915933:27077..27660 | TCONS_00038360-exon-sc0001833-1510915933:27077..27660 | Clytia hemisphaerica | exon |
| TCONS_00038360-exon-sc0001833-1575043694:27077..27660 | TCONS_00038360-exon-sc0001833-1575043694:27077..27660 | Clytia hemisphaerica | exon |
| TCONS_00038360-exon-sc0001833-1491911889:28005..29661 | TCONS_00038360-exon-sc0001833-1491911889:28005..29661 | Clytia hemisphaerica | exon |
| TCONS_00038360-exon-sc0001833-1510915933:28005..29661 | TCONS_00038360-exon-sc0001833-1510915933:28005..29661 | Clytia hemisphaerica | exon |
| TCONS_00038360-exon-sc0001833-1575043694:28005..29661 | TCONS_00038360-exon-sc0001833-1575043694:28005..29661 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001833 | supercontig | sc0001833:27077..29661 + |
Blast
The following BLAST results are available for this feature:
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