TCONS_00038358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038358
Unique NameTCONS_00038358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038358 ID=TCONS_00038358|Name=TCONS_00038358|organism=Clytia hemisphaerica|type=transcript|length=666bp
tgttctcgagagggagataggagtttaactgtggaagtaattccccgggc
accaaaagcgaataaattttatttggtGTCCTCTATTTTTCTTCCACCTA
CcactcagaaaaaaaattcctgtAAAGAGCCGTATCAAGtaagtatcaaa
aaaccttgaaaaaccactttaaaatgaccaaaaaaaccttgaaaaccttg
aaaatcccgaaaaaaaatccgtagacacTCTGATTGAAGATTGATGAAAT
AATTGATTAATGGGAGGTATTCTTGAGGTCATCATTGAGAGTTGAATGCT
GTCACTCGAACGAAGCATTCGGACCTTATTCAATAACTTCATCGCGACAG
TGGGCCAAATTGTACAACCGAGTTGAACAAAGTCCTCAACTTCTCATTTT
TGTAGTATGTATGTTATTCAGTAATTGTTTTGTTATAAGTGTTTGTGGTT
TGTGTTAAAAGTAGTGGTGTATGTTGAGATATGAAATAAGGATGCTTAGG
TAAAAAAATAGAATAAGCATGGAAGAAAAATTAGAAGATATAAAAGGTAG
ATGTGATAAGAATGATAATAATCGAGAAAGTAAAAATggaacatgaaaat
gaaaattacctTCGATAATTGGAGAGTTAGAGTAAATGTTGTTTGCCATG
TTATCTCGAGTCGTGT
Run BLAST on NCBI

transcript from alignment at sc0001832:31877..32542

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038358 ID=TCONS_00038358|Name=TCONS_00038358|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at sc0001832:31877..32542 (Clytia hemisphaerica)
ACACGACTCGAGATAACATGGCAAACAACATTTACTCTAACTCTCCAATT
ATCGAaggtaattttcattttcatgttccATTTTTACTTTCTCGATTATT
ATCATTCTTATCACATCTACCTTTTATATCTTCTAATTTTTCTTCCATGC
TTATTCTATTTTTTTACCTAAGCATCCTTATTTCATATCTCAACATACAC
CACTACTTTTAACACAAACCACAAACACTTATAACAAAACAATTACTGAA
TAACATACATACTACAAAAATGAGAAGTTGAGGACTTTGTTCAACTCGGT
TGTACAATTTGGCCCACTGTCGCGATGAAGTTATTGAATAAGGTCCGAAT
GCTTCGTTCGAGTGACAGCATTCAACTCTCAATGATGACCTCAAGAATAC
CTCCCATTAATCAATTATTTCATCAATCTTCAATCAGAgtgtctacggat
tttttttcgggattttcaaggttttcaaggtttttttggtcattttaaag
tggtttttcaaggttttttgatacttaCTTGATACGGCTCTTTacaggaa
ttttttttctgagtgGTAGGTGGAAGAAAAATAGAGGACaccaaataaaa
tttattcgcttttggtgcccggggaattacttccacagttaaactcctat
ctccctctcgagaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022964XLOC_022964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038358-exon-sc0001832-1491911889:31877..32542TCONS_00038358-exon-sc0001832-1491911889:31877..32542Clytia hemisphaericaexon
TCONS_00038358-exon-sc0001832-1510915933:31877..32542TCONS_00038358-exon-sc0001832-1510915933:31877..32542Clytia hemisphaericaexon
TCONS_00038358-exon-sc0001832-1575043694:31877..32542TCONS_00038358-exon-sc0001832-1575043694:31877..32542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001832supercontigsc0001832:31877..32542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.245271	0.324725	0.608029	0.541297	1.32638	0.268662	0.345716	0.671995	0.524122	0.322836	0.766408	0.0659212	0.824547	0.578266	0.108352	0.184504	0.510875	0.205303	0.507153	0.133215	0.318513	0.596375	0.403642	0	0.54679	0.518347	0.157144	0.925809	0	0.157886
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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