TCONS_00038355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038355
Unique NameTCONS_00038355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038355 ID=TCONS_00038355|Name=TCONS_00038355|organism=Clytia hemisphaerica|type=transcript|length=745bp
CAGAAGAAACACCTTTACAAAGttctaatttcaaaatatctgaGCAGAAG
TCAGTTAATAAGATCTTTCTGATGGACCGGTTATGCTGTTTGTAAACATT
GTGGTCATCAGGCAAATACCAACCGTATACCATCACTGTGAAATCAAGAG
ATGAGTTTATAATGATTTCAAGTTTTGGTATGGAAAACTTCAAGCTCATA
AGTGAGAAAGCATTGCTCACCAGTGAAAACAACCTTCCAATTAGAAAGTT
TCCTCTTCGAACATTGACTCTTGAAATCCTCATAAGTTTCAAATACAACA
ACCTCAACATCAGTTTCTTCTTCAACCACTGGTACAACCGGAGTTGGGTC
TGCAACAGGTGGTGGAGGCACACGAACAAGTATTCTTCGAGGAGTAGTTA
CACTTTTTTCATGAGATTTTTCAGGAAGATTGATCGCAGGCAAGGCATTT
AACTTTGGTTTTCTCACTCCGCTTAATGTAAACTCAAAGTCAGAATCTTT
GTAATGCTTCCCACATATCCAAACTTTAGATCTCTCAATTCTCTTTTTTA
AATCACTGTCAataacacgaaatttttttatcacatCCACTAAATTGTTC
TTCCACTCAGCATCAATTGGCCTAGAAGGCAGCTTGAACAAACCTACTCC
TTTATATTGGGGAGAACCACGATAGACAGGACAGCCAGGGAAGACACATC
GGTCGATTTTtgacgttttcgagcactttctgaaagtaacctttt
Run BLAST on NCBI

protein sequence of TCONS_00038355-protein

>TCONS_00038355-protein ID=TCONS_00038355-protein|Name=TCONS_00038355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
KVTFRKCSKTSKIDRCVFPGCPVYRGSPQYKGVGLFKLPSRPIDAEWKNN
LVDVIKKFRVIDSDLKKRIERSKVWICGKHYKDSDFEFTLSGVRKPKLNA
LPAINLPEKSHEKSVTTPRRILVRVPPPPVADPTPVVPVVEEETDVEVVV
FETYEDFKSQCSKRKLSNWKVVFTGEQCFLTYELEVFHTKT
Run BLAST on NCBI

transcript from alignment at sc0001832:9764..10508

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038355 ID=TCONS_00038355|Name=TCONS_00038355|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0001832:9764..10508 (Clytia hemisphaerica)
aaaaggttactttcagaaagtgctcgaaaacgtcaAAAATCGACCGATGT
GTCTTCCCTGGCTGTCCTGTCTATCGTGGTTCTCCCCAATATAAAGGAGT
AGGTTTGTTCAAGCTGCCTTCTAGGCCAATTGATGCTGAGTGGAAGAACA
ATTTAGTGGatgtgataaaaaaatttcgtgttatTGACAGTGATTTAAAA
AAGAGAATTGAGAGATCTAAAGTTTGGATATGTGGGAAGCATTACAAAGA
TTCTGACTTTGAGTTTACATTAAGCGGAGTGAGAAAACCAAAGTTAAATG
CCTTGCCTGCGATCAATCTTCCTGAAAAATCTCATGAAAAAAGTGTAACT
ACTCCTCGAAGAATACTTGTTCGTGTGCCTCCACCACCTGTTGCAGACCC
AACTCCGGTTGTACCAGTGGTTGAAGAAGAAACTGATGTTGAGGTTGTTG
TATTTGAAACTTATGAGGATTTCAAGAGTCAATGTTCGAAGAGGAAACTT
TCTAATTGGAAGGTTGTTTTCACTGGTGAGCAATGCTTTCTCACTTATGA
GCTTGAAGTTTTCCATACCAAAACTTGAAATCATTATAAACTCATCTCTT
GATTTCACAGTGATGGTATACGGTTGGTATTTGCCTGATGACCACAATGT
TTACAAACAGCATAACCGGTCCATCAGAAAGATCTTATTAACTGACTTCT
GCtcagatattttgaaattagaaCTTTGTAAAGGTGTTTCTTCTG

Coding sequence (CDS) from alignment at sc0001832:9764..10508

>TCONS_00038355 ID=TCONS_00038355|Name=TCONS_00038355|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0001832:9764..10508 (Clytia hemisphaerica)
aaggttactttcagaaagtgctcgaaaacgtcaAAAATCGACCGATGTGT
CTTCCCTGGCTGTCCTGTCTATCGTGGTTCTCCCCAATATAAAGGAGTAG
GTTTGTTCAAGCTGCCTTCTAGGCCAATTGATGCTGAGTGGAAGAACAAT
TTAGTGGatgtgataaaaaaatttcgtgttatTGACAGTGATTTAAAAAA
GAGAATTGAGAGATCTAAAGTTTGGATATGTGGGAAGCATTACAAAGATT
CTGACTTTGAGTTTACATTAAGCGGAGTGAGAAAACCAAAGTTAAATGCC
TTGCCTGCGATCAATCTTCCTGAAAAATCTCATGAAAAAAGTGTAACTAC
TCCTCGAAGAATACTTGTTCGTGTGCCTCCACCACCTGTTGCAGACCCAA
CTCCGGTTGTACCAGTGGTTGAAGAAGAAACTGATGTTGAGGTTGTTGTA
TTTGAAACTTATGAGGATTTCAAGAGTCAATGTTCGAAGAGGAAACTTTC
TAATTGGAAGGTTGTTTTCACTGGTGAGCAATGCTTTCTCACTTATGAGC
TTGAAGTTTTCCATACCAAAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022961XLOC_022961Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038355-proteinTCONS_00038355-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038355-exon-sc0001832-1491911889:9764..10508TCONS_00038355-exon-sc0001832-1491911889:9764..10508Clytia hemisphaericaexon
TCONS_00038355-exon-sc0001832-1510915933:9764..10508TCONS_00038355-exon-sc0001832-1510915933:9764..10508Clytia hemisphaericaexon
TCONS_00038355-exon-sc0001832-1575043694:9764..10508TCONS_00038355-exon-sc0001832-1575043694:9764..10508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001832supercontigsc0001832:9764..10508 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54714	0.360192	0.50405	0.919293	1.31483	1.08795	1.08764	0.498005	0.89243	1.66274	1.22586	1.18699	1.33527	1.43733	1.68646	1.07399	0.990734	1.4844	1.81155	2.81229	1.60378	2.41102	0.37946	0.975275	0.615558	1.01478	2.05139	1.64882	2.42291	2.19096
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006612Znf_C2CH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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