TCONS_00038354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038354
Unique NameTCONS_00038354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038354 ID=TCONS_00038354|Name=TCONS_00038354|organism=Clytia hemisphaerica|type=transcript|length=267bp
CAGATgtaactaaaaaattaaaaagctgtgtGAAAACATATGTTACAAAG
TTGGTAAAATGCTGATTAAAAAGTCgtaaaaaagtgataaaaagtgataa
agtCGTAAAACTATGAATTGTCACGAGGGACATCAAATGTGTCCGGAGGG
ACGtctttaaagctttttaaaaagaatttgctCATATGACGGCACGTGGA
GATTAGTtcggttcttttgtttataagttTATCTTTGGAAGTAATTATGT
GGTACTTTTCGGTCANN
Run BLAST on NCBI

transcript from alignment at sc0001832:8761..9027

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038354 ID=TCONS_00038354|Name=TCONS_00038354|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0001832:8761..9027 (Clytia hemisphaerica)
NNTGACCGAAAAGTACCACATAATTACTTCCAAAGATAaacttataaaca
aaagaaccgaACTAATCTCCACGTGCCGTCATATGagcaaattcttttta
aaaagctttaaagaCGTCCCTCCGGACACATTTGATGTCCCTCGTGACAA
TTCATAGTTTTACGactttatcactttttatcacttttttacGACTTTTT
AATCAGCATTTTACCAACTTTGTAACATATGTTTTCacacagctttttaa
ttttttagttacATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022960XLOC_022960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038354-exon-sc0001832-1491911889:8761..9027TCONS_00038354-exon-sc0001832-1491911889:8761..9027Clytia hemisphaericaexon
TCONS_00038354-exon-sc0001832-1510915933:8761..9027TCONS_00038354-exon-sc0001832-1510915933:8761..9027Clytia hemisphaericaexon
TCONS_00038354-exon-sc0001832-1575043694:8761..9027TCONS_00038354-exon-sc0001832-1575043694:8761..9027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001832supercontigsc0001832:8761..9027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95841	1.73095	0.773135	0	13.0883	9.08248	9.40386	12.1067	9.2727	4.8856	2.99727	2.7584	2.75457	5.59321	1.67988	3.9661	1.77669	2.00073	5.03177	0	4.57658	4.18555	0.905592	3.70065	1.27053	7.76522	3.98032	1.06776	4.59705	2.67638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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