TCONS_00038352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038352
Unique NameTCONS_00038352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038352 ID=TCONS_00038352|Name=TCONS_00038352|organism=Clytia hemisphaerica|type=transcript|length=818bp
GAAAATTCTTACAACCCGCGCAATAATATGCCGGTAAAGCAGCAACGTTA
TATTTTTGCACATTTGCACGCCAGATATTCAGCCCACTACATTCACGGTG
TAAATGAAAAGGCTGTCCACAGACCTCGCACTCGATCCATTGATCTTCAT
CTTTCCAGGAACCACCACAAGCACCACACGGTTAGGAAGATTGTATTTCT
TCGCCTTTCTCACCTTCGTTTAAAATGTTATCGTTGTCGGCGCTCTCAAT
CTCATCATCAACATCACTGAAATTTGTGGTGGAGATATTTAATGTCGAAC
TTGATGCTGGCGATGACGGGGTTAATGACGAACTTGATGATGATGAGTTT
AATGTCGAACTTGATGCCGACGATGACGGGGTTAATGAATGATGATCTTG
ACAGTGACGGTGACCGTGACGGGGTTAATGTCGAACTTGATGATGACAAT
AACAAATCCTTTGGTGAAATTGGTCTCCCAGGCACAATGTCCTTCTTGGA
GGGTCTTTTTGGCCGTTCTTTTTCTGCCGCTCTCTTCGTCACTTCTTGCA
TACCAGCCAGATGCTGCACAGTGACTTTGTTTAAACAAGAcgtttctttt
gatattttctcttcCTGGAAAAGAATTAATTAGTAACATTAACAAAACAA
GCCCAAGGAACACGGCAACGTCTAGTGAATGTGCAAGGTGAGTTGCGTTT
GGAGGAAGAATTAACCAGATTCTGTTCCTTCTGGAGCACATAACGTCATT
GAAATACATGTGCCGGCTGCATTACCGGCGTACATAATGCTAAAATCAGA
TAAAAAGGTAAGCATTCT
Run BLAST on NCBI

transcript from alignment at sc0001832:24875..26322-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038352 ID=TCONS_00038352|Name=TCONS_00038352|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at sc0001832:24875..26322- (Clytia hemisphaerica)
GAAAATTCTTACAACCCGCGCAATAATATGCCGGTAAAGCAGCAACGTTA
TATTTTTGCACATTTGCACGCCAGATATTCAGCCCACTACATTCACGGTG
TAAATGAAAAGGCTGTCCACAGACCTCGCACTCGATCCATTGATCTTCAT
CTTTCCAGGAACCACCACAAGCACCACACGGTTAGGAAGATTGTATTTCT
TCGCCTTTCTCACCTTCGTTTAAAATGTTATCGTTGTCGGCGCTCTCAAT
CTCATCATCAACATCACTGAAATTTGTGGTGGAGATATTTAATGTCGAAC
TTGATGCTGGCGATGACGGGGTTAATGACGAACTTGATGATGATGAGTTT
AATGTCGAACTTGATGCCGACGATGACGGGGTTAATGAATGATGATCTTG
ACAGTGACGGTGACCGTGACGGGGTTAATGTCGAACTTGATGATGACAAT
AACAAATCCTTTGGTGAAATTGGTCTCCCAGGCACAATGTCCTTCTTGGA
GGGTCTTTTTGGCCGTTCTTTTTCTGCCGCTCTCTTCGTCACTTCTTGCA
TACCAGCCAGATGCTGCACAGTGACTTTGTTTAAACAAGACGTTTCTTTT
GATATTTTCTCTTCCTGGAAAAGAATTAATTAGTAACATTAACAAAACAA
GGTAACATTAATTCGAAAGAAGTTCGGCTTATTTAGATTGATCTTTTTCA
AACCACGGCATTTTTATAATTTAGAGTTAAACATCTTGACTCATAATTCC
AGAGGCAATTAATGCAGCAAACTCCAGGGAGAAATGTGAGGTATGAGCAT
ATAACATAAGACAATAATTTTTTGCTAAAGTTAAAATTCCAAATTACCGC
TGTTGGGATTTTCTTCAATAATGGTTTTGGATCTAGTGGATAGATGCCGC
AAGTCTTGAAACCACTGACGAGTGAATCTGACTGGAGCGTCTCGTGCAGC
TTGAATACCAACGGTGGAAACTCTGCCTTTTGAATCGTGCTACCAAAAAC
TATATAATAACTAGTGTCATCCAAACATACTTCAAGAACTAATTTTCACC
AGCACTAATTTTGGTGGTCGAAAGAAATTCGAGAAAACCGCGATTACTGG
TCATTAAATTTTGCGGGTTTGAGCTCACAGATATTATTTGCGGGTAGAAA
AAAGCGACAATTAATCACATATTAAAGAACTTACTTTAGCATTTTCTAAA
TTCCATAAAACTAACTTTGTCCTTATTCAATCTTACCTCCATTCGCCAGT
TGGTCAAAATTTTTCTCCATTTTGCCTTCAGCCCAAGGAACACGGCAACG
TCTAGTGAATGTGCAAGGTGAGTTGCGTTTGGAGGAAGAATTAACCAGAT
TCTGTTCCTTCTGGAGCACATAACGTCATTGAAATACATGTGCCGGCTGC
ATTACCGGCGTACATAATGCTAAAATCAGATAAAAAGGTAAGCATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022959XLOC_022959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038352-exon-sc0001832-1575043694:25672..26322TCONS_00038352-exon-sc0001832-1575043694:25672..26322Clytia hemisphaericaexon
TCONS_00038352-exon-sc0001832-1575043694:24875..25041TCONS_00038352-exon-sc0001832-1575043694:24875..25041Clytia hemisphaericaexon
TCONS_00038352-exon-sc0001832-1510915933:25672..26322TCONS_00038352-exon-sc0001832-1510915933:25672..26322Clytia hemisphaericaexon
TCONS_00038352-exon-sc0001832-1510915933:24875..25041TCONS_00038352-exon-sc0001832-1510915933:24875..25041Clytia hemisphaericaexon
TCONS_00038352-exon-sc0001832-1491911889:25672..26322TCONS_00038352-exon-sc0001832-1491911889:25672..26322Clytia hemisphaericaexon
TCONS_00038352-exon-sc0001832-1491911889:24875..25041TCONS_00038352-exon-sc0001832-1491911889:24875..25041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001832supercontigsc0001832:24875..26322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.335223	0	0.0645317	0.130719	0.0985977	0	0.622809	0.568878	0	0.104154	0.0958539	0.305249	0.267452	0.84249	0.319495	0.00282251	0.783753	0	1.01139	0.85977	0.543002	0	0.0750148	0.312733	0.144479	0.267834	0	0	0.26351
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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