TCONS_00038351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038351
Unique NameTCONS_00038351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038351 ID=TCONS_00038351|Name=TCONS_00038351|organism=Clytia hemisphaerica|type=transcript|length=445bp
CCCAAACTATgactatagatgctttgagtaagcatcccgtcagcaccttg
aattgactacccaattcccctcacatggcatgggttgacccgggcgaagg
tttgttcacttgccaagtgaaccgttgtgagtgggaatcaaaccttggtc
gcctgtacaggaatcaaggttgatgcccactataccacaacgccTCTTCA
GTAAAGTCTTTAATCATCCCCCATTTAGACTATTGTTCCCAGCTTTGGAA
CCCACAGGAAAGGAGCCTGATCCAAGGAANAGACTATTGTTCCCAGCTTT
GGAACCCACAGGAAAAGAGCCTGATCCAAGGAATTGAGGCTGTTCAAAGA
TCATTTACACGGCAAATCACCGATCAAAGCATTGAGCTACTGGGAAAGAC
GAAGGAGTTTCGAATGTATTCTTTGCAACGAAGGAGGGAAAGATA
Run BLAST on NCBI

transcript from alignment at sc0001831:34585..35029

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038351 ID=TCONS_00038351|Name=TCONS_00038351|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0001831:34585..35029 (Clytia hemisphaerica)
TATCTTTCCCTCCTTCGTTGCAAAGAATACATTCGAAACTCCTTCGTCTT
TCCCAGTAGCTCAATGCTTTGATCGGTGATTTGCCGTGTAAATGATCTTT
GAACAGCCTCAATTCCTTGGATCAGGCTCTTTTCCTGTGGGTTCCAAAGC
TGGGAACAATAGTCTNTTCCTTGGATCAGGCTCCTTTCCTGTGGGTTCCA
AAGCTGGGAACAATAGTCTAAATGGGGGATGATTAAAGACTTTACTGAAG
Aggcgttgtggtatagtgggcatcaaccttgattcctgtacaggcgacca
aggtttgattcccactcacaacggttcacttggcaagtgaacaaaccttc
gcccgggtcaacccatgccatgtgaggggaattgggtagtcaattcaagg
tgctgacgggatgcttactcaaagcatctatagtcATAGTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022958XLOC_022958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038351-exon-sc0001831-1491911889:34585..35029TCONS_00038351-exon-sc0001831-1491911889:34585..35029Clytia hemisphaericaexon
TCONS_00038351-exon-sc0001831-1510915933:34585..35029TCONS_00038351-exon-sc0001831-1510915933:34585..35029Clytia hemisphaericaexon
TCONS_00038351-exon-sc0001831-1575043694:34585..35029TCONS_00038351-exon-sc0001831-1575043694:34585..35029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001831supercontigsc0001831:34585..35029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35553	1.52661	4.67051	4.17114	0	0.31192	0.391927	0.485425	0.370032	0.767112	0	0.431575	0.658719	0.902479	1.15241	0.55987	0.645259	1.80297	1.58572	1.92371	1.40205	1.30842	0.940794	1.06989	1.16356	0.802496	4.48	5.65692	2.78927	3.40591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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