TCONS_00038350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038350
Unique NameTCONS_00038350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038350 ID=TCONS_00038350|Name=TCONS_00038350|organism=Clytia hemisphaerica|type=transcript|length=426bp
gaattgacttatttatcttttAAATCTTATGAAAATTAGATTCCTTGTGG
CTTTCCAgctttttcctgaagaattgtcatttcttcatttcactcctctt
taccatgacattttctgaaattgtcgaaaactggaTTGTTCCCCCATTGA
GTGCGAGTAGGCTTCCACTCTACGCGGGAGTATGTGGTTCTCCTCCGTAA
CGTATTTTATATTTCCCAATGTTTCGTGCGCGTCTATTGTCTTGTTTTAT
GTATTGTCTTTGTCTTGTCTTGTCCCTTGTGAATTTgtattgtgacgtca
cttaATTGGATTTTGTAGGCGttttaaaatgttatttctCTGAATGTTGT
TTACTGAACTGTTGTATATTATTGTGAGTGCTGTGAGGGTGAAGTGAAAG
AACTTTGGTATCTTAGTAagtatttt
Run BLAST on NCBI

transcript from alignment at sc0001831:32595..33020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038350 ID=TCONS_00038350|Name=TCONS_00038350|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0001831:32595..33020 (Clytia hemisphaerica)
aaaatactTACTAAGATACCAAAGTTCTTTCACTTCACCCTCACAGCACT
CACAATAATATACAACAGTTCAGTAAACAACATTCAGagaaataacattt
taaaaCGCCTACAAAATCCAATtaagtgacgtcacaatacAAATTCACAA
GGGACAAGACAAGACAAAGACAATACATAAAACAAGACAATAGACGCGCA
CGAAACATTGGGAAATATAAAATACGTTACGGAGGAGAACCACATACTCC
CGCGTAGAGTGGAAGCCTACTCGCACTCAATGGGGGAACAAtccagtttt
cgacaatttcagaaaatgtcatggtaaagaggagtgaaatgaagaaatga
caattcttcaggaaaaagcTGGAAAGCCACAAGGAATCTAATTTTCATAA
GATTTaaaagataaataagtcaattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022957XLOC_022957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038350-exon-sc0001831-1491911889:32595..33020TCONS_00038350-exon-sc0001831-1491911889:32595..33020Clytia hemisphaericaexon
TCONS_00038350-exon-sc0001831-1510915933:32595..33020TCONS_00038350-exon-sc0001831-1510915933:32595..33020Clytia hemisphaericaexon
TCONS_00038350-exon-sc0001831-1575043694:32595..33020TCONS_00038350-exon-sc0001831-1575043694:32595..33020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001831supercontigsc0001831:32595..33020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94285	2.05044	1.93011	2.15506	1.76382	1.74225	2.52234	0.787127	1.79103	1.02391	3.10776	1.99112	2.46718	1.46797	0.557017	1.0959	0.245466	1.18822	1.04277	2.15809	0.632293	0.297372	0.187457	1.02255	3.86175	4.38648	0	0.239251	0.362927	0.464777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top