TCONS_00038348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038348
Unique NameTCONS_00038348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038348 ID=TCONS_00038348|Name=TCONS_00038348|organism=Clytia hemisphaerica|type=transcript|length=447bp
GAAGTATCAACAATCTCCAGATATCATCACATTTCGACCACAAGACCAAG
ATCCAACTTCCAAAGACGTATAGTAGATCTTTCATCCCTGTCGACAAAGA
TGAAAGTCCGTCTCCAAGTAAGCTTCGAAGATGGACGTACTTAGAGAAAA
TCCATCCATTCTTGCAGCAAGACGATGACGATCTAGATGTTGGACTTCTC
ATTGGAAGAAATTACCCACGTGCCCTAGAACCAATAGAAGTAATTCCATG
CCAGGATGATGGACCATATGCCTTCCGATCGGCTTTGGGATGGTGTGTCA
CTGGGCCGATCGTCACCAATTCTTCAAGCCAAAGATCAACACGATGCAAC
TTTATCGCGTTCTCCGAAGGCAAGAGACCAACACTTTTTGTCTTTGAAGA
TAAGATCAAAGAAGTCGGGCTGAAAGAAACGATGCTACAGATGCTAC
Run BLAST on NCBI

protein sequence of TCONS_00038348-protein

>TCONS_00038348-protein ID=TCONS_00038348-protein|Name=TCONS_00038348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
SINNLQISSHFDHKTKIQLPKTYSRSFIPVDKDESPSPSKLRRWTYLEKI
HPFLQQDDDDLDVGLLIGRNYPRALEPIEVIPCQDDGPYAFRSALGWCVT
GPIVTNSSSQRSTRCNFIAFSEGKRPTLFVFEDKIKEVGLKETMLQML
Run BLAST on NCBI

transcript from alignment at sc0001831:28670..29116

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038348 ID=TCONS_00038348|Name=TCONS_00038348|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0001831:28670..29116 (Clytia hemisphaerica)
GTAGCATCTGTAGCATCGTTTCTTTCAGCCCGACTTCTTTGATCTTATCT
TCAAAGACAAAAAGTGTTGGTCTCTTGCCTTCGGAGAACGCGATAAAGTT
GCATCGTGTTGATCTTTGGCTTGAAGAATTGGTGACGATCGGCCCAGTGA
CACACCATCCCAAAGCCGATCGGAAGGCATATGGTCCATCATCCTGGCAT
GGAATTACTTCTATTGGTTCTAGGGCACGTGGGTAATTTCTTCCAATGAG
AAGTCCAACATCTAGATCGTCATCGTCTTGCTGCAAGAATGGATGGATTT
TCTCTAAGTACGTCCATCTTCGAAGCTTACTTGGAGACGGACTTTCATCT
TTGTCGACAGGGATGAAAGATCTACTATACGTCTTTGGAAGTTGGATCTT
GGTCTTGTGGTCGAAATGTGATGATATCTGGAGATTGTTGATACTTC

Coding sequence (CDS) from alignment at sc0001831:28670..29116

>TCONS_00038348 ID=TCONS_00038348|Name=TCONS_00038348|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0001831:28670..29116 (Clytia hemisphaerica)
TAGCATCTGTAGCATCGTTTCTTTCAGCCCGACTTCTTTGATCTTATCTT
CAAAGACAAAAAGTGTTGGTCTCTTGCCTTCGGAGAACGCGATAAAGTTG
CATCGTGTTGATCTTTGGCTTGAAGAATTGGTGACGATCGGCCCAGTGAC
ACACCATCCCAAAGCCGATCGGAAGGCATATGGTCCATCATCCTGGCATG
GAATTACTTCTATTGGTTCTAGGGCACGTGGGTAATTTCTTCCAATGAGA
AGTCCAACATCTAGATCGTCATCGTCTTGCTGCAAGAATGGATGGATTTT
CTCTAAGTACGTCCATCTTCGAAGCTTACTTGGAGACGGACTTTCATCTT
TGTCGACAGGGATGAAAGATCTACTATACGTCTTTGGAAGTTGGATCTTG
GTCTTGTGGTCGAAATGTGATGATATCTGGAGATTGTTGATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022955XLOC_022955Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038348-proteinTCONS_00038348-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038348-exon-sc0001831-1491911889:28670..29116TCONS_00038348-exon-sc0001831-1491911889:28670..29116Clytia hemisphaericaexon
TCONS_00038348-exon-sc0001831-1510915933:28670..29116TCONS_00038348-exon-sc0001831-1510915933:28670..29116Clytia hemisphaericaexon
TCONS_00038348-exon-sc0001831-1575043694:28670..29116TCONS_00038348-exon-sc0001831-1575043694:28670..29116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001831supercontigsc0001831:28670..29116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78879	1.01754	0.16878	0.660501	1.20614	0.953111	0	0.538256	0.879306	0.155595	0.151024	1.58844	0.396557	0.514785	0.0846447	0	0	0.114697	0	0	0	0	0.341833	0.310775	1.7605	1.99972	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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