TCONS_00038344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038344
Unique NameTCONS_00038344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038344 ID=TCONS_00038344|Name=TCONS_00038344|organism=Clytia hemisphaerica|type=transcript|length=866bp
CTTTTCCTAGTCTACAATATAGACAGTTCCATGTTTTCAACCTTTCTTTT
GGCCAATACACCAttatagtgtcctccagggtttgttcccccaccaaatt
cttgattttttaaaatctcctccctctttttttttccttatgacttttca
gttttttagtttcccccctcttttttgctttccccccagaaaattctgaa
aatatcagttccccccatatacccatttctcaaatttcaatctgacacaa
acgtaaaattttgctgcaaaaggaatactagacaaaatagaacgaaaatg
gGTTAATGTATAAACAAACATGCTTAGAAAAGCAGACTTAAaacaacaat
gaaatgaaaaattaaaatgctataataaaatcaaaacaactttaAAAAAT
ACTGAATATAAGGATCCTGAAATAAACACACAAGATGAAGAAATACtaaa
tcaaaaaagaagaagtgATTGCACACTTCTCCCCACCAAATATGCCAACT
ATCGATGCCCCCActctttttttcccccctttactgttcaaattttcatt
ccCCCCCTCACCcatccaaaattggaaaattgggggaggacactatgtac
ACGGGCTTTCATCTACGTCACTTGTTAACATTTGATTAGGCGGTAACCTG
AACGCTGGAATGAGATGTGATGTAGAATACCCTTTTCATGCTTTATATAG
TAGTTTTTTGTAAGCCCCTCATATATACCTTTAGGTGTTTTTATCGTTCT
TTACATTATACAGAAAATTTCAACAGTTAGTATGATTTAGCCTGTACCAA
ATCCGTTAGCTGTTGCGACTTACGGAATGTTTTTGATCAGCAAACCTCGT
CCAAGAATCGTTACGT
Run BLAST on NCBI

transcript from alignment at sc0001830:34786..35651

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038344 ID=TCONS_00038344|Name=TCONS_00038344|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0001830:34786..35651 (Clytia hemisphaerica)
ACGTAACGATTCTTGGACGAGGTTTGCTGATCAAAAACATTCCGTAAGTC
GCAACAGCTAACGGATTTGGTACAGGCTAAATCATACTAACTGTTGAAAT
TTTCTGTATAATGTAAAGAACGATAAAAACACCTAAAGGTATATATGAGG
GGCTTACAAAAAACTACTATATAAAGCATGAAAAGGGTATTCTACATCAC
ATCTCATTCCAGCGTTCAGGTTACCGCCTAATCAAATGTTAACAAGTGAC
GTAGATGAAAGCCCGTgtacatagtgtcctcccccaattttccaattttg
gatgGGTGAGGGGGggaatgaaaatttgaacagtaaaggggggaaaaaaa
gagTGGGGGCATCGATAGTTGGCATATTTGGTGGGGAGAAGTGTGCAATc
acttcttcttttttgatttaGTATTTCTTCATCTTGTGTGTTTATTTCAG
GATCCTTATATTCAGTATTTTTtaaagttgttttgattttattatagcat
tttaatttttcatttcattgttgttTTAAGTCTGCTTTTCTAAGCATGTT
TGTTTATACATTAACccattttcgttctattttgtctagtattccttttg
cagcaaaattttacgtttgtgtcagattgaaatttgagaaatgggtatat
ggggggaactgatattttcagaattttctggggggaaagcaaaaaagagg
ggggaaactaaaaaactgaaaagtcataaggaaaaaaaaagagggaggag
attttaaaaaatcaagaatttggtgggggaacaaaccctggaggacacta
taaTGGTGTATTGGCCAAAAGAAAGGTTGAAAACATGGAACTGTCTATAT
TGTAGACTAGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022951XLOC_022951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038344-exon-sc0001830-1491911889:34786..35651TCONS_00038344-exon-sc0001830-1491911889:34786..35651Clytia hemisphaericaexon
TCONS_00038344-exon-sc0001830-1510915933:34786..35651TCONS_00038344-exon-sc0001830-1510915933:34786..35651Clytia hemisphaericaexon
TCONS_00038344-exon-sc0001830-1575043694:34786..35651TCONS_00038344-exon-sc0001830-1575043694:34786..35651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001830supercontigsc0001830:34786..35651 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9797	1.89597	5.54828	6.61555	5.95098	3.74336	5.00699	6.30472	1.24096	1.93913	2.35248	2.00995	3.04639	2.6686	1.99308	1.87563	0.971124	1.47431	3.46599	2.76033	3.40723	5.44812	2.3258	2.26774	1.26474	1.95634	4.54734	5.73365	1.8273	2.41856
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top