TCONS_00038343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038343
Unique NameTCONS_00038343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038343 ID=TCONS_00038343|Name=TCONS_00038343|organism=Clytia hemisphaerica|type=transcript|length=778bp
gttcgaattagagagagttgactgtaataCCTGTATTTTCCTCATATTTA
CGATTCGTCTTTATTCAACTCACAAATAAacataacaaaaattttctgtg
GTATTTTCTTGGGGTCCTTCCACTGCAAAAGCTTCCGAAAATAAATCTAT
CGAAAGACACTGACACTGGGCGTGCAGGTTTGACGTGTGTTACGGTACCA
TTTTTTCTGCCGCTGTTTcggtttttgaagaaaaaaatgacgatATTTCG
GTATTAAACTGTGATTGTTTGTGATATGAGAAAAATTCGTCAGTATTGCG
GTATTGGCGACCCCCGTACATCCCCTGTCAGTGGAAAGGAATTTCGGTAA
TCTCATGATGAAACATTTAACGAACGAAGTACTGCCAATTTCCCGTGAAG
TCCCCTGGTTGGTTAGAACCTAATGGCCAATCATCACAATCCATTCTGTT
TGGTTCGTAAATGTGTAAATGTCCAAGTGAATATATAAAATAGGCGTGGT
TGTATAGTTTTGCAGTAACATAGGTCCATATACCAGTAGAGACACAACTG
TGTTGACCAATAATTGAATTGTCTGTCGGTAATAAATAATAATCGGTATT
TTGACatgcttgtttttcttcatttgataCACTATTGAGCAGAACGGAAT
CGATAATTTGAGTATTGTTAAAAACAACATCAATGGTTCGACCATGAGAA
GGCTTGTGACATTTCATTCGAATCTCAATAAATGTGTTGCGAATGGCGCT
CACAGTAGGTTCAGATAATGCGAAACCT
Run BLAST on NCBI

protein sequence of TCONS_00038343-protein

>TCONS_00038343-protein ID=TCONS_00038343-protein|Name=TCONS_00038343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
GFALSEPTVSAIRNTFIEIRMKCHKPSHGRTIDVVFNNTQIIDSVLLNSV
SNEEKQACQNTDYYLLPTDNSIIGQHSCVSTGIWTYVTAKLYNHAYFIYS
LGHLHIYEPNRMDCDDWPLGSNQPGDFTGNWQYFVR
Run BLAST on NCBI

transcript from alignment at sc0001830:33657..34434

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038343 ID=TCONS_00038343|Name=TCONS_00038343|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at sc0001830:33657..34434 (Clytia hemisphaerica)
AGGTTTCGCATTATCTGAACCTACTGTGAGCGCCATTCGCAACACATTTA
TTGAGATTCGAATGAAATGTCACAAGCCTTCTCATGGTCGAACCATTGAT
GTTGTTTTTAACAATACTCAAATTATCGATTCCGTTCTGCTCAATAGTGt
atcaaatgaagaaaaacaagcatGTCAAAATACCGATTATTATTTATTAC
CGACAGACAATTCAATTATTGGTCAACACAGTTGTGTCTCTACTGGTATA
TGGACCTATGTTACTGCAAAACTATACAACCACGCCTATTTTATATATTC
ACTTGGACATTTACACATTTACGAACCAAACAGAATGGATTGTGATGATT
GGCCATTAGGTTCTAACCAACCAGGGGACTTCACGGGAAATTGGCAGTAC
TTCGTTCGTTAAATGTTTCATCATGAGATTACCGAAATTCCTTTCCACTG
ACAGGGGATGTACGGGGGTCGCCAATACCGCAATACTGACGAATTTTTCT
CATATCACAAACAATCACAGTTTAATACCGAAATatcgtcatttttttct
tcaaaaaccgAAACAGCGGCAGAAAAAATGGTACCGTAACACACGTCAAA
CCTGCACGCCCAGTGTCAGTGTCTTTCGATAGATTTATTTTCGGAAGCTT
TTGCAGTGGAAGGACCCCAAGAAAATACcacagaaaatttttgttatgtT
TATTTGTGAGTTGAATAAAGACGAATCGTAAATATGAGGAAAATACAGGt
attacagtcaactctctctaattcgaac

Coding sequence (CDS) from alignment at sc0001830:33657..34434

>TCONS_00038343 ID=TCONS_00038343|Name=TCONS_00038343|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0001830:33657..34434 (Clytia hemisphaerica)
GGTTTCGCATTATCTGAACCTACTGTGAGCGCCATTCGCAACACATTTAT
TGAGATTCGAATGAAATGTCACAAGCCTTCTCATGGTCGAACCATTGATG
TTGTTTTTAACAATACTCAAATTATCGATTCCGTTCTGCTCAATAGTGta
tcaaatgaagaaaaacaagcatGTCAAAATACCGATTATTATTTATTACC
GACAGACAATTCAATTATTGGTCAACACAGTTGTGTCTCTACTGGTATAT
GGACCTATGTTACTGCAAAACTATACAACCACGCCTATTTTATATATTCA
CTTGGACATTTACACATTTACGAACCAAACAGAATGGATTGTGATGATTG
GCCATTAGGTTCTAACCAACCAGGGGACTTCACGGGAAATTGGCAGTACT
TCGTTCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022950XLOC_022950Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038343-proteinTCONS_00038343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038343-exon-sc0001830-1491911889:33657..34434TCONS_00038343-exon-sc0001830-1491911889:33657..34434Clytia hemisphaericaexon
TCONS_00038343-exon-sc0001830-1510915933:33657..34434TCONS_00038343-exon-sc0001830-1510915933:33657..34434Clytia hemisphaericaexon
TCONS_00038343-exon-sc0001830-1575043694:33657..34434TCONS_00038343-exon-sc0001830-1575043694:33657..34434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001830supercontigsc0001830:33657..34434 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187053	0	0.282388	0.483477	0	0.199333	0	0.0750468	0	0	0	0	1.61724	1.80871	0.389455	0.759899	0.187227	0.191901	3.31403	3.88404	0.301423	0.088214	0.285962	0.259981	0.0669436	0.298728	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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