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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038337 ID=TCONS_00038337|Name=TCONS_00038337|organism=Clytia hemisphaerica|type=transcript|length=2866bp
TCCTGGTTAAGAAAGAGACGGCAAGCAAGAGACGAAATTTCTTCTGAATT
AATATCAAAATGCGAATGCTTTACATCTGTGACACTCAAAATGCTCCTCA
TTAACATTTTCAGTATTTGCAAGGCAGCCAGTATGGAATGCTTCATTGCA
ATAATAGCATTTGACCATTTTATTAGTAGCTGGAAGCTGACAATCACAGA
AGACAGGAATAAGTTCAGTTGATTCTGCCTTGAAAacagcattttcattt
tcaatgttaTCTCTAGGAAATCTTTCAATGTTATTCGACTCCAAACAACT
TAGCAAATGCTTTCTAAATTTGTCTTGCAGATAACATTCATTGTCAGGTA
ACACTCCACAAGCAATGTCAGTGGCGTAAGCCAGGCAGAATAGACCACAA
TCTGTGGAACCTTTTTGTCTTAACACTTTAGGAAAGGAGACATGGAGGTT
GCCATCTTCAATGAAATATTTGTAAACTTGACAGAGCTGTCTTTTCAAAC
TATCATCAGTCTGGGAATAGATGCTATCATAGACAAACACCTTTCCATTT
CTACCAGTAGATAGAACCCAGTGGTTGTCCCTTACATGATGTATTTGAAT
ACTTTTATCATGGACACTTACTTCTTTAAGGTTATTTTTTTCCGAGACTT
TAGAAATCTTGGAACCAAAGATGGGATCTTGTAAACCCAACAGGTTTGGA
AATTGTTTACGTATAATTTCAAAGGCTTTCATCAATATTTCATCACTTAG
CCAAGAGCTGCGAGAAGAGGGCAGCTTCAAGTTTTGGAAAATAGACAACT
TTTTTGCAGCCCTTCCCCTTGAGGAAagtttcattttcttatttttctcg
gAACTAGTCAGATCAATAGTTTCATTTTCTGAGATACTTCTCTTGACACT
TTTCCTTACCTTTTGATCAATAGTAGATTTAGTCTCCAAAGGAATGATTT
CACTTTTgacattttcactttttttaattttttgaggctTGGTCAAAATG
GAACTTTCAATAGATATTTGCCTCTTACCTTTTCCTACATCATCTTGATT
CATCTGACTAACATCAGCAAAGAGAGGATGTTCTAGCCCAGACCTTTTGT
TGTAGCGAACAGGACGATCAAAACAAGAGTAAGTTAACCAAGCAGTCAAG
CTAGAATCTTTGAATTTGCAATGGTACAAATACTCGTGACTTTTAGGATC
GAGTTTTCTTTCTATTACACTTTCAACTTCTTGATACTCTAAGGGAGCTA
AagatttagaaatttctttagCGAAAGTAAAATCCTTAGACTTTTCTAAT
TCTTTTCTGTGATCCGCCAAATGTTTCTTAAACTGAGGCAacatttgaaa
agattttttatcaTCATTCACTGGCTTCAAAATAATTTCCTCGAGTACAT
GAGAGGCTTTTAACTCCTTTGTCACTATGAGAGATTCAGGAAATTCAAAG
ATGAAGGAGCCTATGATGGTTTCCTTCAAAGGAATCAATCTGCATTTTAC
AGCCTCATCTTCACTAGAAGCGCTAGGAATGGAAGTGCCATTCTTCATAA
TTGATGCTACTTTGCAAACAAGTATTTGATCCTTCACATTTGCAATTACA
AAACGATAGGCAATGATATTGTGATTTGCATCAATAACTCCCTTTCCCGG
TAAATAGTTGCTGGCAATGTGTCGACGAGATCTTTCTCTAGACACATGTT
CACGAGGAGTTAAAATTTTTAATGCCGCTCTTACatgaatttttgtcatt
ttctctCCAATAAGCCTACTTATATACCACTTGTCAGAATCAGATTTTGC
AAACTCTTCTGTACAAAGTTCTTCatcttttttctctattttcacttcaa
tattttcttcttcaagttCATCAAGTAATTCAAAgcctttttcatctttt
tgacCAACAAAAAACtctgaaattttcttttctttttgattagttttttc
agagagAAAATCAGATGGCTTGACATCTCTTAACATTCTTAGACTGTACC
CATCAGAAACAAAACCCTTAAATTGGTTTTCCTCGGGGATGTCTTTAGTA
CATTGGAGAAAAGAAAAATCCTTTAATTTTGCATTAgattcaataaaagc
aattcCCTCTGGGCAAGATTTACGATACGTTTCAATTCCCTCTTTTTTCC
CCTTTTCATAAGCTGAAACGAGGGACTTacgaaattcttcaaaagtcgCT
GGGTATTCATAAGACCCCATGGTAACTTGGGCCAACTTATCTTGGAGCCT
CCTTCGGCTTGTTGTATTTTTGTTTCGTGACACCCATAGCTTTTAACCTG
TCCTCTGTAATATGATTGCTCTGGACTTTGGACAGCTTGTTTACTAGATC
TGATAGAACAGGCTGTGCATCCAAAGATTGGAGCGCATTTGTTTTGGTTC
CCGATTTGAATGGAGACAAAACTGAAGTAGACAGATTTTTAAAATGAGCA
AACATAGCTAACATGTGATATGTTGTTGCAGCAAAAAGAACTTCAGCCGT
TTGATTACAGCCATAGGTCACAAACTTACCACGCTTACTAGGATCTGTTG
CAGCAGAGCGTACAGCATGGACCCTCTTTGATTTAGTTTGCAGGATTTTT
TTCCATATTCTCAATATTGTAATACCTTTACTTATGCTACATTGCATTTC
AAGAGGATTTGAACTAGGCTCTAAAAAAGGTTGAAACAGTGCAATCACAG
CCTGTATGTATAGGGCAGTTCCATGCGAGGTAACTATGTGCTGTTGTAAC
TGATCAGCAACTGATTCTTTGAAAATTTTCAAGGCAGCATCAACGTTTTG
GTCAAAATATGCTGAGAACATGAGATCATTGTTTGAAAAACCTAGTTTAT
GACCTGAATCATCACA Run BLAST on NCBI protein sequence of TCONS_00038337-protein >TCONS_00038337-protein ID=TCONS_00038337-protein|Name=TCONS_00038337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=721bp
MGSYEYPATFEEFRKSLVSAYEKGKKEGIETYRKSCPEGIAFIESNAKLK
DFSFLQCTKDIPEENQFKGFVSDGYSLRMLRDVKPSDFLSEKTNQKEKKI
SEFFVGQKDEKGFELLDELEEENIEVKIEKKDEELCTEEFAKSDSDKWYI
SRLIGEKMTKIHVRAALKILTPREHVSRERSRRHIASNYLPGKGVIDANH
NIIAYRFVIANVKDQILVCKVASIMKNGTSIPSASSEDEAVKCRLIPLKE
TIIGSFIFEFPESLIVTKELKASHVLEEIILKPVNDDKKSFQMLPQFKKH
LADHRKELEKSKDFTFAKEISKSLAPLEYQEVESVIERKLDPKSHEYLYH
CKFKDSSLTAWLTYSCFDRPVRYNKRSGLEHPLFADVSQMNQDDVGKGKR
QISIESSILTKPQKIKKSENVKSEIIPLETKSTIDQKVRKSVKRSISENE
TIDLTSSEKNKKMKLSSRGRAAKKLSIFQNLKLPSSRSSWLSDEILMKAF
EIIRKQFPNLLGLQDPIFGSKISKVSEKNNLKEVSVHDKSIQIHHVRDNH
WVLSTGRNGKVFVYDSIYSQTDDSLKRQLCQVYKYFIEDGNLHVSFPKVL
RQKGSTDCGLFCLAYATDIACGVLPDNECYLQDKFRKHLLSCLESNNIER
FPRDNIENENAVFKAESTELIPVFCDCQLPATNKMVKCYYCNEAFHTGCL
ANTENVNEEHFECHRCKAFAF Run BLAST on NCBI transcript from alignment at sc0001829:34605..37470 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038337 ID=TCONS_00038337|Name=TCONS_00038337|organism=Clytia hemisphaerica|type=transcript|length=2866bp|location=Sequence derived from alignment at sc0001829:34605..37470 (Clytia hemisphaerica)
TGTGATGATTCAGGTCATAAACTAGGTTTTTCAAACAATGATCTCATGTT
CTCAGCATATTTTGACCAAAACGTTGATGCTGCCTTGAAAATTTTCAAAG
AATCAGTTGCTGATCAGTTACAACAGCACATAGTTACCTCGCATGGAACT
GCCCTATACATACAGGCTGTGATTGCACTGTTTCAACCTTTTTTAGAGCC
TAGTTCAAATCCTCTTGAAATGCAATGTAGCATAAGTAAAGGTATTACAA
TATTGAGAATATGGAAAAAAATCCTGCAAACTAAATCAAAGAGGGTCCAT
GCTGTACGCTCTGCTGCAACAGATCCTAGTAAGCGTGGTAAGTTTGTGAC
CTATGGCTGTAATCAAACGGCTGAAGTTCTTTTTGCTGCAACAACATATC
ACATGTTAGCTATGTTTGCTCATTTTAAAAATCTGTCTACTTCAGTTTTG
TCTCCATTCAAATCGGGAACCAAAACAAATGCGCTCCAATCTTTGGATGC
ACAGCCTGTTCTATCAGATCTAGTAAACAAGCTGTCCAAAGTCCAGAGCA
ATCATATTACAGAGGACAGGTTAAAAGCTATGGGTGTCACGAAACAAAAA
TACAACAAGCCGAAGGAGGCTCCAAGATAAGTTGGCCCAAGTTACCATGG
GGTCTTATGAATACCCAGcgacttttgaagaatttcgtAAGTCCCTCGTT
TCAGCTTATGAAAAGGGGAAAAAAGAGGGAATTGAAACGTATCGTAAATC
TTGCCCAGAGGgaattgcttttattgaatcTAATGCAAAATTAAAGGATT
TTTCTTTTCTCCAATGTACTAAAGACATCCCCGAGGAAAACCAATTTAAG
GGTTTTGTTTCTGATGGGTACAGTCTAAGAATGTTAAGAGATGTCAAGCC
ATCTGATTTTctctctgaaaaaactaatcaaaaagaaaagaaaatttcag
aGTTTTTTGTTGgtcaaaaagatgaaaaaggcTTTGAATTACTTGATGaa
cttgaagaagaaaatattgaagtgaaaatagagaaaaaagatGAAGAACT
TTGTACAGAAGAGTTTGCAAAATCTGATTCTGACAAGTGGTATATAAGTA
GGCTTATTGGagagaaaatgacaaaaattcatGTAAGAGCGGCATTAAAA
ATTTTAACTCCTCGTGAACATGTGTCTAGAGAAAGATCTCGTCGACACAT
TGCCAGCAACTATTTACCGGGAAAGGGAGTTATTGATGCAAATCACAATA
TCATTGCCTATCGTTTTGTAATTGCAAATGTGAAGGATCAAATACTTGTT
TGCAAAGTAGCATCAATTATGAAGAATGGCACTTCCATTCCTAGCGCTTC
TAGTGAAGATGAGGCTGTAAAATGCAGATTGATTCCTTTGAAGGAAACCA
TCATAGGCTCCTTCATCTTTGAATTTCCTGAATCTCTCATAGTGACAAAG
GAGTTAAAAGCCTCTCATGTACTCGAGGAAATTATTTTGAAGCCAGTGAA
TGAtgataaaaaatcttttcaaatgtTGCCTCAGTTTAAGAAACATTTGG
CGGATCACAGAAAAGAATTAGAAAAGTCTAAGGATTTTACTTTCGctaaa
gaaatttctaaatctTTAGCTCCCTTAGAGTATCAAGAAGTTGAAAGTGT
AATAGAAAGAAAACTCGATCCTAAAAGTCACGAGTATTTGTACCATTGCA
AATTCAAAGATTCTAGCTTGACTGCTTGGTTAACTTACTCTTGTTTTGAT
CGTCCTGTTCGCTACAACAAAAGGTCTGGGCTAGAACATCCTCTCTTTGC
TGATGTTAGTCAGATGAATCAAGATGATGTAGGAAAAGGTAAGAGGCAAA
TATCTATTGAAAGTTCCATTTTGACCAagcctcaaaaaattaaaaaaagt
gaaaatgtcAAAAGTGAAATCATTCCTTTGGAGACTAAATCTACTATTGA
TCAAAAGGTAAGGAAAAGTGTCAAGAGAAGTATCTCAGAAAATGAAACTA
TTGATCTGACTAGTTccgagaaaaataagaaaatgaaactTTCCTCAAGG
GGAAGGGCTGCAAAAAAGTTGTCTATTTTCCAAAACTTGAAGCTGCCCTC
TTCTCGCAGCTCTTGGCTAAGTGATGAAATATTGATGAAAGCCTTTGAAA
TTATACGTAAACAATTTCCAAACCTGTTGGGTTTACAAGATCCCATCTTT
GGTTCCAAGATTTCTAAAGTCTCGGAAAAAAATAACCTTAAAGAAGTAAG
TGTCCATGATAAAAGTATTCAAATACATCATGTAAGGGACAACCACTGGG
TTCTATCTACTGGTAGAAATGGAAAGGTGTTTGTCTATGATAGCATCTAT
TCCCAGACTGATGATAGTTTGAAAAGACAGCTCTGTCAAGTTTACAAATA
TTTCATTGAAGATGGCAACCTCCATGTCTCCTTTCCTAAAGTGTTAAGAC
AAAAAGGTTCCACAGATTGTGGTCTATTCTGCCTGGCTTACGCCACTGAC
ATTGCTTGTGGAGTGTTACCTGACAATGAATGTTATCTGCAAGACAAATT
TAGAAAGCATTTGCTAAGTTGTTTGGAGTCGAATAACATTGAAAGATTTC
CTAGAGAtaacattgaaaatgaaaatgctgtTTTCAAGGCAGAATCAACT
GAACTTATTCCTGTCTTCTGTGATTGTCAGCTTCCAGCTACTAATAAAAT
GGTCAAATGCTATTATTGCAATGAAGCATTCCATACTGGCTGCCTTGCAA
ATACTGAAAATGTTAATGAGGAGCATTTTGAGTGTCACAGATGTAAAGCA
TTCGCATTTTGATATTAATTCAGAAGAAATTTCGTCTCTTGCTTGCCGTC
TCTTTCTTAACCAGGA Coding sequence (CDS) from alignment at sc0001829:34605..37470 >TCONS_00038337 ID=TCONS_00038337|Name=TCONS_00038337|organism=Clytia hemisphaerica|type=CDS|length=2166bp|location=Sequence derived from alignment at sc0001829:34605..37470 (Clytia hemisphaerica)
ATGGGGTCTTATGAATACCCAGcgacttttgaagaatttcgtAAGTCCCT
CGTTTCAGCTTATGAAAAGGGGAAAAAAGAGGGAATTGAAACGTATCGTA
AATCTTGCCCAGAGGgaattgcttttattgaatcTAATGCAAAATTAAAG
GATTTTTCTTTTCTCCAATGTACTAAAGACATCCCCGAGGAAAACCAATT
TAAGGGTTTTGTTTCTGATGGGTACAGTCTAAGAATGTTAAGAGATGTCA
AGCCATCTGATTTTctctctgaaaaaactaatcaaaaagaaaagaaaatt
tcagaGTTTTTTGTTGgtcaaaaagatgaaaaaggcTTTGAATTACTTGA
TGaacttgaagaagaaaatattgaagtgaaaatagagaaaaaagatGAAG
AACTTTGTACAGAAGAGTTTGCAAAATCTGATTCTGACAAGTGGTATATA
AGTAGGCTTATTGGagagaaaatgacaaaaattcatGTAAGAGCGGCATT
AAAAATTTTAACTCCTCGTGAACATGTGTCTAGAGAAAGATCTCGTCGAC
ACATTGCCAGCAACTATTTACCGGGAAAGGGAGTTATTGATGCAAATCAC
AATATCATTGCCTATCGTTTTGTAATTGCAAATGTGAAGGATCAAATACT
TGTTTGCAAAGTAGCATCAATTATGAAGAATGGCACTTCCATTCCTAGCG
CTTCTAGTGAAGATGAGGCTGTAAAATGCAGATTGATTCCTTTGAAGGAA
ACCATCATAGGCTCCTTCATCTTTGAATTTCCTGAATCTCTCATAGTGAC
AAAGGAGTTAAAAGCCTCTCATGTACTCGAGGAAATTATTTTGAAGCCAG
TGAATGAtgataaaaaatcttttcaaatgtTGCCTCAGTTTAAGAAACAT
TTGGCGGATCACAGAAAAGAATTAGAAAAGTCTAAGGATTTTACTTTCGc
taaagaaatttctaaatctTTAGCTCCCTTAGAGTATCAAGAAGTTGAAA
GTGTAATAGAAAGAAAACTCGATCCTAAAAGTCACGAGTATTTGTACCAT
TGCAAATTCAAAGATTCTAGCTTGACTGCTTGGTTAACTTACTCTTGTTT
TGATCGTCCTGTTCGCTACAACAAAAGGTCTGGGCTAGAACATCCTCTCT
TTGCTGATGTTAGTCAGATGAATCAAGATGATGTAGGAAAAGGTAAGAGG
CAAATATCTATTGAAAGTTCCATTTTGACCAagcctcaaaaaattaaaaa
aagtgaaaatgtcAAAAGTGAAATCATTCCTTTGGAGACTAAATCTACTA
TTGATCAAAAGGTAAGGAAAAGTGTCAAGAGAAGTATCTCAGAAAATGAA
ACTATTGATCTGACTAGTTccgagaaaaataagaaaatgaaactTTCCTC
AAGGGGAAGGGCTGCAAAAAAGTTGTCTATTTTCCAAAACTTGAAGCTGC
CCTCTTCTCGCAGCTCTTGGCTAAGTGATGAAATATTGATGAAAGCCTTT
GAAATTATACGTAAACAATTTCCAAACCTGTTGGGTTTACAAGATCCCAT
CTTTGGTTCCAAGATTTCTAAAGTCTCGGAAAAAAATAACCTTAAAGAAG
TAAGTGTCCATGATAAAAGTATTCAAATACATCATGTAAGGGACAACCAC
TGGGTTCTATCTACTGGTAGAAATGGAAAGGTGTTTGTCTATGATAGCAT
CTATTCCCAGACTGATGATAGTTTGAAAAGACAGCTCTGTCAAGTTTACA
AATATTTCATTGAAGATGGCAACCTCCATGTCTCCTTTCCTAAAGTGTTA
AGACAAAAAGGTTCCACAGATTGTGGTCTATTCTGCCTGGCTTACGCCAC
TGACATTGCTTGTGGAGTGTTACCTGACAATGAATGTTATCTGCAAGACA
AATTTAGAAAGCATTTGCTAAGTTGTTTGGAGTCGAATAACATTGAAAGA
TTTCCTAGAGAtaacattgaaaatgaaaatgctgtTTTCAAGGCAGAATC
AACTGAACTTATTCCTGTCTTCTGTGATTGTCAGCTTCCAGCTACTAATA
AAATGGTCAAATGCTATTATTGCAATGAAGCATTCCATACTGGCTGCCTT
GCAAATACTGAAAATGTTAATGAGGAGCATTTTGAGTGTCACAGATGTAA
AGCATTCGCATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038337-exon-sc0001829-1491911889:34605..37470 | TCONS_00038337-exon-sc0001829-1491911889:34605..37470 | Clytia hemisphaerica | exon |
| TCONS_00038337-exon-sc0001829-1510915933:34605..37470 | TCONS_00038337-exon-sc0001829-1510915933:34605..37470 | Clytia hemisphaerica | exon |
| TCONS_00038337-exon-sc0001829-1575043694:34605..37470 | TCONS_00038337-exon-sc0001829-1575043694:34605..37470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001829 | supercontig | sc0001829:34605..37470 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
The following BLAST results are available for this feature:
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