TCONS_00038335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038335
Unique NameTCONS_00038335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038335 ID=TCONS_00038335|Name=TCONS_00038335|organism=Clytia hemisphaerica|type=transcript|length=266bp
CGGCCACTTGAATTTGCATGATTGGAGCCTGATCTTGAGATAATTTTGTA
CCACACAAGATATCACAAGGGGAGAGGCCATGGCCAGCCTGAAGCCTGTA
Aacaagccttcagccctaccactgtgccacttgttgatttcctccgcagt
aaaaattatcaactaaatcagccaacagccaatGCTAGAATTCATCCGAT
CAACTTTATGCAagaccctaccttacaaatACAATACGATTGCTCTAAAA
GCCGATCACTTGAATT
Run BLAST on NCBI

transcript from alignment at sc0001829:28006..28271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038335 ID=TCONS_00038335|Name=TCONS_00038335|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0001829:28006..28271 (Clytia hemisphaerica)
AATTCAAGTGATCGGCTTTTAGAGCAATCGTATTGTatttgtaaggtagg
gtctTGCATAAAGTTGATCGGATGAATTCTAGCattggctgttggctgat
ttagttgataatttttactgcggaggaaatcaacaagtggcacagtggta
gggctgaaggcttgtTTACAGGCTTCAGGCTGGCCATGGCCTCTCCCCTT
GTGATATCTTGTGTGGTACAAAATTATCTCAAGATCAGGCTCCAATCATG
CAAATTCAAGTGGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022944XLOC_022944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038335-exon-sc0001829-1491911889:28006..28271TCONS_00038335-exon-sc0001829-1491911889:28006..28271Clytia hemisphaericaexon
TCONS_00038335-exon-sc0001829-1510915933:28006..28271TCONS_00038335-exon-sc0001829-1510915933:28006..28271Clytia hemisphaericaexon
TCONS_00038335-exon-sc0001829-1575043694:28006..28271TCONS_00038335-exon-sc0001829-1575043694:28006..28271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001829supercontigsc0001829:28006..28271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.71578	0	0	10.3155	2.76944	3.73218	12.7849	0.795976	2.72048	3.77379	1.78109	2.24297	2.78812	5.84028	7.95099	4.53939	11.7135	3.47661	5.89318	6.38513	3.57988	2.90337	3.90416	1.55013	5.37353	1.79021	1.75712	2.66543	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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