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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038330 ID=TCONS_00038330|Name=TCONS_00038330|organism=Clytia hemisphaerica|type=transcript|length=1889bp
NTCAGATATTCCGGATTTACTGACGGTCTCCTTTCTGATTATGGACAAGC
TTCTTTATCTCGATGTGGTTCTTGAATGTTCAATTAAAGTTGGGTTGTTC
TCAGTGTTCTGTCTTTTCCATTTCTAATGATCTGCCATTAATATGTCGGT
TCATTAATTGGTTTAagttataatttttcatttaattgttttatacttct
aaaagaaaaaaattattcgaaTTTCATGCCTCGTCTTTTGTTCATTGTCT
TTTAGATATTGTCTGTTAAAATATGTGTATTCAGTTTTtgttttatgatt
tcttttttagctATACGTTTTGCTCGAGTCTTCTTTGCTTcttatttctt
tcaaattacCGCGTAATTTTCTCGTATACATGTATATCAGTCAAATCCCT
GATTTGACCTGTAGTAGCTGAGAAGTCTCTTCGTAACACTTCTGCGCCAG
CTTCTACTCAGGAGTTTCTTCTGTAACTTTATACTCCTACAAGTTCATTG
ttcatattattttcaattatttgtGTAATGTCTATattcattttcttctc
tttcattGCCATGGTCTTCCTTGTTGCGTTAATTTAGTCGTTATCCTTCA
AGGGATCAATTTGATATTGATCAATCGatcgtttttttttctattgtcaa
tTGGTTAAAGTTCTTTCAGATTTTATCATGAGGCGTTACGGTAAGATGAC
TTCGCGAATGTCTATCTTCTATCCAACCTCTTCTCTCAATAATGGTAAGA
TAATTGTTGCTGGTTCGGTGTTATCGATTGCCATCGAATTTATAAATaac
tctctttctctctctctttgAATATCGTAATCGGTGTAATAAATATCGCT
TAATAAAATATCTCAATTCGGTAAGAAATATCAATTCCTCTGTCTCCAGA
CAGGAATACCATCGTAAATAAACCATATCTCATTCAATTGTTTCCATGAG
CTTAAACAACCGAACAAAGGTAAAATATCCTTTCAACTCTTACGTTGACA
TCTCCCTGTGCTCAATGGGATGCTCAACTCGTTGATTGATATCATATCTT
AATTAGGCTGAAATCAAGTAATCTCTACTTAGTTATCCGTCGATACCGCA
AATCTATGCCAATCGGGCATATACATACAGCCTTAACCTAGGTTTTCAAT
TTCAATCTCACTCTAACTCTCACTCTCAGCGCGTAGGATATCACAAAAAA
CATATCATGTAAAACATTTAACATTCAATATATGAAAACTCTATTGATGG
AACAAACATGTAATATTCTTTAAACAAGTAGCAAGTTGGCGTCTCCGGGC
CCTGGAACACTCAACCTCTTATTAATTTAATATCACATCTTGGTTCTtga
ataaatctttttcaaaggtAAATACAATCAAAAAAACTCTTGGTCAAACG
GAACTTACAATGTTCTTCAAACTCACGCGATCTCTCGTCACTCTCTCTCG
CTTTCACTTATTTCTACGTCATGTCTTCATCCTCCGGTTTTATATTTCTC
TAATGTTTCTAGTCAAGTTTGGGATATTTGAAACCAAAAATATATACACT
ATTTACACAATCGTTGTAGATTCTCTCTTCTCTACTCCTCTCATCTctca
tttaaaaaagaaaaaatatcactTACAGTTTTGGGGACTTTCTTTGAAGT
CTAAAAGAAATACTGTTGGAGCAAAAAACATTAATATACCACTACAACAA
ACAAAGTCCACTTCTTGGAATAgaataaaatcataaacaaCACACATTCC
AACTACTGTTCAAACGCAAACGAAATGAAATATATACAAAATACTCACTA
AAATTAATGGTCTATAAATCGAAACTTTATCTCGGACTTGAACCTCCATG
TCGTATATCCCCTGCTTGGATACACGTAGTTCTATggtg Run BLAST on NCBI transcript from alignment at sc0001828:11748..13636 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038330 ID=TCONS_00038330|Name=TCONS_00038330|organism=Clytia hemisphaerica|type=transcript|length=1889bp|location=Sequence derived from alignment at sc0001828:11748..13636 (Clytia hemisphaerica)
caccATAGAACTACGTGTATCCAAGCAGGGGATATACGACATGGAGGTTC
AAGTCCGAGATAAAGTTTCGATTTATAGACCATTAATTTTAGTGAGTATT
TTGTATATATTTCATTTCGTTTGCGTTTGAACAGTAGTTGGAATGTGTGt
tgtttatgattttattcTATTCCAAGAAGTGGACTTTGTTTGTTGTAGTG
GTATATTAATGTTTTTTGCTCCAACAGTATTTCTTTTAGACTTCAAAGAA
AGTCCCCAAAACTGTAagtgatattttttcttttttaaatgagAGATGAG
AGGAGTAGAGAAGAGAGAATCTACAACGATTGTGTAAATAGTGTATATAT
TTTTGGTTTCAAATATCCCAAACTTGACTAGAAACATTAGAGAAATATAA
AACCGGAGGATGAAGACATGACGTAGAAATAAGTGAAAGCGAGAGAGAGT
GACGAGAGATCGCGTGAGTTTGAAGAACATTGTAAGTTCCGTTTGACCAA
GAGTTTTTTTGATTGTATTTacctttgaaaaagatttattcaAGAACCAA
GATGTGATATTAAATTAATAAGAGGTTGAGTGTTCCAGGGCCCGGAGACG
CCAACTTGCTACTTGTTTAAAGAATATTACATGTTTGTTCCATCAATAGA
GTTTTCATATATTGAATGTTAAATGTTTTACATGATATGTTTTTTGTGAT
ATCCTACGCGCTGAGAGTGAGAGTTAGAGTGAGATTGAAATTGAAAACCT
AGGTTAAGGCTGTATGTATATGCCCGATTGGCATAGATTTGCGGTATCGA
CGGATAACTAAGTAGAGATTACTTGATTTCAGCCTAATTAAGATATGATA
TCAATCAACGAGTTGAGCATCCCATTGAGCACAGGGAGATGTCAACGTAA
GAGTTGAAAGGATATTTTACCTTTGTTCGGTTGTTTAAGCTCATGGAAAC
AATTGAATGAGATATGGTTTATTTACGATGGTATTCCTGTCTGGAGACAG
AGGAATTGATATTTCTTACCGAATTGAGATATTTTATTAAGCGATATTTA
TTACACCGATTACGATATTcaaagagagagagaaagagagttATTTATAA
ATTCGATGGCAATCGATAACACCGAACCAGCAACAATTATCTTACCATTA
TTGAGAGAAGAGGTTGGATAGAAGATAGACATTCGCGAAGTCATCTTACC
GTAACGCCTCATGATAAAATCTGAAAGAACTTTAACCAattgacaataga
aaaaaaaacgatCGATTGATCAATATCAAATTGATCCCTTGAAGGATAAC
GACTAAATTAACGCAACAAGGAAGACCATGGCaatgaaagagaagaaaat
gaatATAGACATTACacaaataattgaaaataatatgaaCAATGAACTTG
TAGGAGTATAAAGTTACAGAAGAAACTCCTGAGTAGAAGCTGGCGCAGAA
GTGTTACGAAGAGACTTCTCAGCTACTACAGGTCAAATCAGGGATTTGAC
TGATATACATGTATACGAGAAAATTACGCGgtaatttgaaagaaataagA
AGCAAAGAAGACTCGAGCAAAACGTATagctaaaaaagaaatcataaaac
aAAAACTGAATACACATATTTTAACAGACAATATCTAAAAGACAATGAAC
AAAAGACGAGGCATGAAAttcgaataatttttttcttttagaagtataaa
acaattaaatgaaaaattataactTAAACCAATTAATGAACCGACATATT
AATGGCAGATCATTAGAAATGGAAAAGACAGAACACTGAGAACAACCCAA
CTTTAATTGAACATTCAAGAACCACATCGAGATAAAGAAGCTTGTCCATA
ATCAGAAAGGAGACCGTCAGTAAATCCGGAATATCTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038330-exon-sc0001828-1491911889:11748..13636 | TCONS_00038330-exon-sc0001828-1491911889:11748..13636 | Clytia hemisphaerica | exon |
| TCONS_00038330-exon-sc0001828-1510915933:11748..13636 | TCONS_00038330-exon-sc0001828-1510915933:11748..13636 | Clytia hemisphaerica | exon |
| TCONS_00038330-exon-sc0001828-1575043694:11748..13636 | TCONS_00038330-exon-sc0001828-1575043694:11748..13636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001828 | supercontig | sc0001828:11748..13636 . |
Blast
The following BLAST results are available for this feature:
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