TCONS_00038326 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038326
Unique Name	TCONS_00038326
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	347

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001826:3342..10608-

transcript sequence

>TCONS_00038326 ID=TCONS_00038326|Name=TCONS_00038326|organism=Clytia hemisphaerica|type=transcript|length=347bp
AGAAGAGCGATTAGCTATCGCTCTTTACCGTTTAGTGAGGGGGGATTACC
TCTTCACTATATCGGAGATGGTTGGACATGGTGAGGCCACTGTATGTGTC
ATAATTAACGAAGTTTGTGATGCTATTGTGACAGCATTGTGGGAGGACTC
AGTCATGAGATTCTTTCCAAAGAGTCCCCAAAATTTCGAGGATGCAATGA
TAGCCATGGACACCGAATGGCAATTCCAATATGCATTTTAGTACACCATC
ATCATGATCTTCATCAGAGTTAATTTCAGAATCAGAACAAAATAACTGAT
TTCTGAGTTCATCTTCATAGAAGCATGGTGTGTTAATATCGTCCAAG

Run BLAST on NCBI

transcript from alignment at sc0001826:3342..10608-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038326 ID=TCONS_00038326|Name=TCONS_00038326|organism=Clytia hemisphaerica|type=transcript|length=7267bp|location=Sequence derived from alignment at sc0001826:3342..10608- (Clytia hemisphaerica)
AGAAGAGCGATTAGCTATCGCTCTTTACCGTTTAGTGAGGGGGGATTACC
TCTTCACTATATCGGAGATGGTTGGACATGGTGAGGCCACTGTATGTGTC
ATAATTAACGAAGTTTGTGATGCTATTGTGACAGCATTGTGGGAGGACTC
AGTCATGAGATTCTTTCCAAAGAGTCCCCAAAATTTCGAGGATGCAATGA
TAGCCATGGACACCGAATGGCAATTCCAATATGCATTTTGTGCTATTGAT
GGTAGCCACATTCCAATAAAGTGTCCCCCTGGCGGAGCTGAAGCAATGAA
AGAATATTATAACTTTAAAGGATTCTATTCAACTGTCCTCATGGCTTTAG
TCGATGCAAAGTACCGATTTATTTGGGCCTCTATTGGTGCTCCTGGTAAC
ACTCACGATTCACTTTATTTTAAATCTTCCGATTTATATCATGATATATG
CCAGGGTGAGATTATTCCAGCTACGATACAGAAACTAGCCCAAGTAGAGG
TACCGCCGATGATACTTGTTGATAGTGCCCTCGAGCTCAAGACCTGGCTC
ACAAAACCTTACGGAGATGCCATTCCTTCGCCTGAAAAGCGGTACTTCAA
TTACCGTCTGAGTAGGGCAAGGATGGTCACAGAAGGAGCTTTTGGCAAGC
TGAAGAGCAGATTTCGGATTTTACACAGAAAGTGTGAGTCTCAAAAAGAA
ACTGTAAAATTAATGGGTTTGGCATGTATTGTGCTGCACAACATTTGTTT
GGATAAGGGGGATCTTGTGCCTCGACAATACGATTTGACGCTTGATGTCG
CCAGCAACAAAAGGCGTGATCCAAAAACTGTTCGAGACCTCCTTGATTTT
ATTCGAGCTGATACCAACTTTCTGACTAAAGGTAAGGCTGCAGCTGAAAA
TGTCTGAAATGCAATTAAAGATTCTTTTTGGGCGGAGAAAAATGGCAATG
TTGAACATGATAATGAGGAATAATTTATTAAAAAAAAACACTAAAAAAGT
ACAAAAACATCAATTCTTTTATACATTTTTTATTAAAATTTTAAAAATAC
AAAAACATCAATGCTTTTATATATTTTTTATTAAAATTTTAAAAATACAA
AAACTTCAATGCTTTTATAAAAACAATTATTTTTGTTAATGAAATGTAAG
TTTCTAAAGGGGAAACATTTGTAATAGTAAAAAATAAATATTTTGAGTGA
CAAACATAGTGAATTTTCTAGAAGTTTCTAAAAAGATAGTGTAAACCTTA
AACCTGAAACTTAATTTTCTATGAAAAAAAATTATGTTCGAGTGCTAATG
TCTTCTGTTTATGAATTGTTTAATCTAAAAGTTACTATTTGAAAAATTAT
GAAATTTAACAGCAAGTTAATTAAATTTTAAATTTTATTTTTAATTTTGT
TAATTTGAATTTCAGCAACTGTTTATTGTAGATAATATTGTGTGGTCTAT
ATAATGTATGTTTATTTCTAAAAGTTTGTTTTGTTACATATTTTAGACAA
AAAGATTTGCAAAATTATATCGAATTGTATGACAATGTTATTCTTTCTTC
ATATTGTTTTCTGCATGTGTAAATCAAATCAAAAAAATCATTTGACGTCA
AATTTTTTCTGTGCTGCCACTATCCTGAAAATGCAACAATATGGCGGAAA
TCAACGAAAATTCTAACAAGGAAATTCAACAAAATTATGGATATTGCACA
CCCAATAACTGTTTAACAAACACNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNAACTAATGGAATGATAAGATCCATAAATTGTAAAGATGTAAGATTGTT
TCATAGAGGTCAATAGACCTGAGAAATACACTTCTATAAATTAAAATTAA
ATGTGGTTTGAATGAATATTTCCTGAGATTCTCTTGAATTTTCTTCTGAA
CTTGTTTAGCACACAGTTGCACAATCTGTTTACCAAGAAAAGTGATAATA
CGTTACGTAAATTTAATCTTTTTCATATTTTAGCCAAAAAGCAATAAAAT
CATGGAAGCCGGCAATAATGAGCGCACCTTGGCAGTCGTGATACCTCCAC
CTTGAGTGGCTAATACGCAGTTGTGCAGGGGACCGGTAGCCTTTCCTAGC
CTAGCCTTTCGTTTTTTTTTATGGTACAGCGAGAGCTACAGATCGAATCT
GTGTTTGGCTGGACGTACCAATCTTTACTTTGTAAAGATACAGTCTGTCT
ACTGCAATATTTTAGAATTGAACACTGTATTCTAAATGCTACATCTATTC
AAAGATAAATTAATTCAAAGCAAGCTTAATTTTTTTAAGGACAACTAAAT
TTTAACCTGGAAACTAGCCTGGATATCCAGGCTGTAAATTATTTCACAGT
CTAGTTTTAGATATTTTATGTTCTGATTTACAGCCTGGTCTCNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNTATTACATATTGTAATGTTTGTA
ATGTTATATGATGGTTACATATAATAAAACACATCGCTCTAAAACTACCT
TCTCAGAGAACTCACGAGCTTCTGATCANNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCACACTATC
TACATCACATTCTGTATTATAAATATTTTTCGTTTTTTTGTCTGTTCTTG
CATCATATTTTATGATTCTGTTAATATTTTTGTCAAAAATTATTATTAAG
ACATTAAAATAATAACTGAATAATTAATTAGTTCCATCCTTCTAAAACCA
CTCTCTTAGGGTCCTTGCAAGCTTCTGTTTGGTGCCATTTTATATCCATT
CACACAATCCACATCACATTTTGTATAATAAATATTTTTCGTGCTTTTGT
CTTGTTACGCATCATATTTTATGATTTTGTCATTATTTTTGCAAGTAATA
AGTGTCACTATGTCAAAATAGGTTGTTATTCTATTCAATTGTCATTTTAT
AATATCTAAATAGCATGTATTACTTTTTTGTAATTTAATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGTATTGGTCTACTTGTTTGAGCTACAATCAAAACAAAAGCTTGAAAAAC
TATCAAAACTTAAGTTACCTCAAAAGCAGAATACTAGTACACAGTTAATG
TTAGATAAACTTTCTAGAAAAGAAGTCAAAGGACATATTCAAACACTATT
CAAACAGATTCAAAATAAAATCATTGCCATTATCATTACCATTACCATTA
TCTTCAACCACATTATCATTATTAACAGGGGGGATTAGGGGTAGTTGAAC
TCCCATGGATAGGGCCATTAAAGAGATAAGCTGTTGGTCAACGGCCGCTT
GACGCTTGCACTCCTCCTTCATGAGGCTCACTAAATCATCGAGTGGTTTA
GTAGCTGATAACGCATCATTTAAGTTTTTCATAGTATTTGAAATTTCTTG
TAAAACATCATTTTTTTTCTTTATTTTTGGATTTTGTAGACTTTTTACAT
GTCTCGTGATCTGGGACAAAGCCACGTGCAGAGGCAGATGACGACGAAGT
TGGTGGTGTCTCATCACTGTCTTTCTTTGAAGAAAGAGACTCAGATTCGA
CCACTTTCCGTTTTTTCGAACTTGGTTCAATCTGTTCTGACCTTCTGCAC
GTGGGTCTTGATTTGAGTTCTTGGCAGAGACGGGCGAACCAAGGACCCAA
TTCGTTGTCCTCCATGAACCTGGTCAACCCTGAACCCTTTTGGGATGTTA
GCATAAAACATTTTGCTTTGCTTATACAATTGCGAAATTTTCGTCTTGTT
TGTTCAACATTGAACATAAAAGAAGTGCCATTGGCTGCACATCGTTCTTC
TAGAATATTTATAACTTGCTGAAAAACTTCCTTGTTTCTTTTATTTGAGG
AGATTGATGTAAAAAGTCTTTTTTTTATTTCTGGCGTGTCCAATATAATG
TCAATCATGTCTGTTAACACAGACTGAGGCCAAATAGCCTTTGTACCCGA
TTTTTTCTTTTTGCCTTTACCATTTGATTTTATGGGAGAACCTTCACGTG
AACCTTCAGCCTCCCTTAATCTCTCACGGATGTCTCTCGGATCTTTTATG
ATTGGGGAGAGTACACCATCATCATGATCTTCATCAGAGTTAATTTCAGA
ATCAGAACAAAATAACTGATTTCTGAGTTCATCTTCATAGAAGCATGGTG
TGTTAATATCGTCCAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_022935	XLOC_022935	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038326-exon-sc0001826-1575043694:10370..10608	TCONS_00038326-exon-sc0001826-1575043694:10370..10608	Clytia hemisphaerica	exon
TCONS_00038326-exon-sc0001826-1575043694:3342..3449	TCONS_00038326-exon-sc0001826-1575043694:3342..3449	Clytia hemisphaerica	exon
TCONS_00038326-exon-sc0001826-1510915933:10370..10608	TCONS_00038326-exon-sc0001826-1510915933:10370..10608	Clytia hemisphaerica	exon
TCONS_00038326-exon-sc0001826-1510915933:3342..3449	TCONS_00038326-exon-sc0001826-1510915933:3342..3449	Clytia hemisphaerica	exon
TCONS_00038326-exon-sc0001826-1491911889:10370..10608	TCONS_00038326-exon-sc0001826-1491911889:10370..10608	Clytia hemisphaerica	exon
TCONS_00038326-exon-sc0001826-1491911889:3342..3449	TCONS_00038326-exon-sc0001826-1491911889:3342..3449	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001826	supercontig	sc0001826:3342..10608 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.21664	0	0	0.171217	0.341958	0	0	0	0	0	0	0	0	0	0	0	0.828061	0.739024	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00038326 vs. Swiss-Prot (Human)

BLAST of TCONS_00038326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00038326 (transcript) - C. hemisphaerica