TCONS_00038324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038324
Unique NameTCONS_00038324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038324 ID=TCONS_00038324|Name=TCONS_00038324|organism=Clytia hemisphaerica|type=transcript|length=350bp
TTGCTTGTGCTTCATGTTTTTATCCAAGTTTCCTCTTTGGAATATATACA
GTTTagcattatttttagtttttcatttaatttgaaatcaatggaaATTA
GATAAAATTGGTAAgagttttttatattatttattatttatttattagtt
ttttagaTCATCAAAATGATTCATCGTTATACTAAATACTATATATActa
aagctttttaagagtGTCCGGGCAAGATTgacaatgattttatttttgca
accttaaaatttttctaaacaatttagaaaaaaataacccTCAATATATA
AAGTTAAAAACTGGTTTATGGTAGCTGAATTTGATTTCTCAAGCTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0001825:865..1214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038324 ID=TCONS_00038324|Name=TCONS_00038324|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at sc0001825:865..1214 (Clytia hemisphaerica)
AAAAAAGCTTGAGAAATCAAATTCAGCTACCATAAACCAGTTTTTAACTT
TATATATTGAgggttatttttttctaaattgtttagaaaaattttaaggt
tgcaaaaataaaatcattgtcAATCTTGCCCGGACactcttaaaaagctt
tagTATATATAGTATTTAGTATAACGATGAATCATTTTGATGAtctaaaa
aactaataaataaataataaataatataaaaaactcTTACCAATTTTATC
TAATttccattgatttcaaattaaatgaaaaactaaaaataatgctAAAC
TGTATATATTCCAAAGAGGAAACTTGGATAAAAACATGAAGCACAAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022933XLOC_022933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038324-exon-sc0001825-1491911889:865..1214TCONS_00038324-exon-sc0001825-1491911889:865..1214Clytia hemisphaericaexon
TCONS_00038324-exon-sc0001825-1510915933:865..1214TCONS_00038324-exon-sc0001825-1510915933:865..1214Clytia hemisphaericaexon
TCONS_00038324-exon-sc0001825-1575043694:865..1214TCONS_00038324-exon-sc0001825-1575043694:865..1214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001825supercontigsc0001825:865..1214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536829	0	0	0	2.38504	0.268133	1.29396	0	2.12031	2.36371	3.05903	2.75899	1.00405	1.24766	0.714376	1.26043	0.944431	0.598629	1.8723	2.7989	0.486551	0.398733	0	0.262285	0.540295	0	1.75396	1.60144	0.837819	0.56907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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