TCONS_00038319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038319
Unique NameTCONS_00038319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038319 ID=TCONS_00038319|Name=TCONS_00038319|organism=Clytia hemisphaerica|type=transcript|length=554bp
GTGCTGTATAGGTCGGAAACATAGTTTAGTTTTCGTAGCGTCACCAAGCA
ATCACTTAGTGTGTAGTAGAACTCGGTGAGCGAAGTTTGATCTCTGTTGC
CAGTTGGTTTGTAGTCCACAATCTTTGTGATGACGGACTCTGCAATTCTT
GATCGTTGACCGAACATGTACTTTATTCTTCTGAGTGCGAGGACGTAGCC
TTCATGGTCATTTCTGAAGCCTTGGATCGACCTCTTGACTTCCCCTCGTA
CAGCTTGATGTAGATAGATGCATTTCTGAAGCGTGGTCAAATATCCTTGG
TTGTGGACAAGATCTCTAAAACTGGTTATGAATTCTACGTAGCTTGATAG
AGTGCCATCAAACCATGGTATTCTGATCCTTGGTAGACCTTGCTGTACAA
ACCATGTGGTGAGTGTATTTTCCATTTTACTACCAGCCAGTTGATACGGT
GGTTTGTTGATGTCGAGCTCATCTATCCATGCATCGACCTTGTTAGAGTT
GATTGGTATAGATGAGTGATCTGTAGTTGTTTGATTCTTCGGTACTGAAT
CCTT
Run BLAST on NCBI

protein sequence of TCONS_00038319-protein

>TCONS_00038319-protein ID=TCONS_00038319-protein|Name=TCONS_00038319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
KDSVPKNQTTTDHSSIPINSNKVDAWIDELDINKPPYQLAGSKMENTLTT
WFVQQGLPRIRIPWFDGTLSSYVEFITSFRDLVHNQGYLTTLQKCIYLHQ
AVRGEVKRSIQGFRNDHEGYVLALRRIKYMFGQRSRIAESVITKIVDYKP
TGNRDQTSLTEFYYTLSDCLVTLRKLNYVSDLYS
Run BLAST on NCBI

transcript from alignment at sc0001824:16201..16754

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038319 ID=TCONS_00038319|Name=TCONS_00038319|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at sc0001824:16201..16754 (Clytia hemisphaerica)
AAGGATTCAGTACCGAAGAATCAAACAACTACAGATCACTCATCTATACC
AATCAACTCTAACAAGGTCGATGCATGGATAGATGAGCTCGACATCAACA
AACCACCGTATCAACTGGCTGGTAGTAAAATGGAAAATACACTCACCACA
TGGTTTGTACAGCAAGGTCTACCAAGGATCAGAATACCATGGTTTGATGG
CACTCTATCAAGCTACGTAGAATTCATAACCAGTTTTAGAGATCTTGTCC
ACAACCAAGGATATTTGACCACGCTTCAGAAATGCATCTATCTACATCAA
GCTGTACGAGGGGAAGTCAAGAGGTCGATCCAAGGCTTCAGAAATGACCA
TGAAGGCTACGTCCTCGCACTCAGAAGAATAAAGTACATGTTCGGTCAAC
GATCAAGAATTGCAGAGTCCGTCATCACAAAGATTGTGGACTACAAACCA
ACTGGCAACAGAGATCAAACTTCGCTCACCGAGTTCTACTACACACTAAG
TGATTGCTTGGTGACGCTACGAAAACTAAACTATGTTTCCGACCTATACA
GCAC

Coding sequence (CDS) from alignment at sc0001824:16201..16754

>TCONS_00038319 ID=TCONS_00038319|Name=TCONS_00038319|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0001824:16201..16754 (Clytia hemisphaerica)
AAGGATTCAGTACCGAAGAATCAAACAACTACAGATCACTCATCTATACC
AATCAACTCTAACAAGGTCGATGCATGGATAGATGAGCTCGACATCAACA
AACCACCGTATCAACTGGCTGGTAGTAAAATGGAAAATACACTCACCACA
TGGTTTGTACAGCAAGGTCTACCAAGGATCAGAATACCATGGTTTGATGG
CACTCTATCAAGCTACGTAGAATTCATAACCAGTTTTAGAGATCTTGTCC
ACAACCAAGGATATTTGACCACGCTTCAGAAATGCATCTATCTACATCAA
GCTGTACGAGGGGAAGTCAAGAGGTCGATCCAAGGCTTCAGAAATGACCA
TGAAGGCTACGTCCTCGCACTCAGAAGAATAAAGTACATGTTCGGTCAAC
GATCAAGAATTGCAGAGTCCGTCATCACAAAGATTGTGGACTACAAACCA
ACTGGCAACAGAGATCAAACTTCGCTCACCGAGTTCTACTACACACTAAG
TGATTGCTTGGTGACGCTACGAAAACTAAACTATGTTTCCGACCTATACA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022928XLOC_022928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038319-exon-sc0001824-1491911889:16201..16754TCONS_00038319-exon-sc0001824-1491911889:16201..16754Clytia hemisphaericaexon
TCONS_00038319-exon-sc0001824-1510915933:16201..16754TCONS_00038319-exon-sc0001824-1510915933:16201..16754Clytia hemisphaericaexon
TCONS_00038319-exon-sc0001824-1575043694:16201..16754TCONS_00038319-exon-sc0001824-1575043694:16201..16754Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038319-proteinTCONS_00038319-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001824supercontigsc0001824:16201..16754 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205668	0.339859	0.232868	0.166918	0.416032	0.21917	0	0.400818	0.0866563	0.429351	0.682716	0.38074	0.301817	0.346496	0.270939	0.250657	0	0	0.519342	0.87058	0.497129	0.495594	0.691846	0.208808	0.920924	0.820259	0.501745	0.405	0.773549	0.69773
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top