TCONS_00038316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038316
Unique NameTCONS_00038316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038316 ID=TCONS_00038316|Name=TCONS_00038316|organism=Clytia hemisphaerica|type=transcript|length=280bp
AGGCTCTGCAAGGTTTTTTGGCTCaacaaactttatcaaatcaaaCAGAG
ATTGACCTTGAAAATAATACTCTTTTAAATCTTGCTGTAATCGAGGGAAA
CGATGCTGAAAGGCAAATCTGTGATTATGTAGATTCTTTAATGACAGCTA
TGAATCCAATTGAAGGACCTGTTGATGAATGGGAAAAGTCAAATGTTCAT
CCATGCAAAAAAAGACTTGAGGATATACCTGAAGAGGATTTAGAACAAGA
TTACATAGATCTAGCAAATAGCGTGCAACG
Run BLAST on NCBI

transcript from alignment at sc0001824:1..280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038316 ID=TCONS_00038316|Name=TCONS_00038316|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0001824:1..280 (Clytia hemisphaerica)
CGTTGCACGCTATTTGCTAGATCTATGTAATCTTGTTCTAAATCCTCTTC
AGGTATATCCTCAAGTCTTTTTTTGCATGGATGAACATTTGACTTTTCCC
ATTCATCAACAGGTCCTTCAATTGGATTCATAGCTGTCATTAAAGAATCT
ACATAATCACAGATTTGCCTTTCAGCATCGTTTCCCTCGATTACAGCAAG
ATTTAAAAGAGTATTATTTTCAAGGTCAATCTCTGtttgatttgataaag
tttgttGAGCCAAAAAACCTTGCAGAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022925XLOC_022925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038316-exon-sc0001824-1491911889:1..280TCONS_00038316-exon-sc0001824-1491911889:1..280Clytia hemisphaericaexon
TCONS_00038316-exon-sc0001824-1510915933:1..280TCONS_00038316-exon-sc0001824-1510915933:1..280Clytia hemisphaericaexon
TCONS_00038316-exon-sc0001824-1575043694:1..280TCONS_00038316-exon-sc0001824-1575043694:1..280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001824supercontigsc0001824:1..280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8761	8.67759	7.27676	4.38103	7.33354	7.90236	7.62709	6.54535	5.83234	4.12817	0.500863	13.6536	3.94548	9.56064	3.64935	2.41004	0	3.80388	5.25526	6.5991	6.69179	6.2949	0.566835	3.09201	8.49253	12.3165	2.71152	8.68141	2.19485	1.67715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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