TCONS_00038313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038313
Unique NameTCONS_00038313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038313 ID=TCONS_00038313|Name=TCONS_00038313|organism=Clytia hemisphaerica|type=transcript|length=672bp
AACAACTGGAAACAATCTGGTGTTTTCAGTTCGAGTCAAGCTAACGTTAC
CTTGGTACAGACCGCTGCTTGCACGTCGGTACAACTGCTTCGACTCTAGC
TGTTAAGTCAACACATCAACAGAGAGCTTGTTGGTTAGGCTCCATTCACA
TTTTCAACTTCGATCGTCGCTGACAAAATCAACTGCTCACATTCAACCAC
CAAACGATGTCTTTCACTAGTGAAACTGGAGACCAGATGTCTATGGATCT
GAAGATAGCGAGTCTTCGCAGAAAACGAGGAGGAAAGAAAGGCTCAATAA
CCAAACGAATCAACTTGATTGAGGAAATTATGAAGATGAATGGCAGTCGT
ACCAGAATTCGCTCATTGTACGACTCGATGATTCTTGTTTTGGAAGAAGC
TCACGTCATCAACCAAAAACTTGAAGATCTTGGTGATGATACAGAAGGAT
GGATGGATGACATGAAGTTTCAAACCGacaacatcaaatcaaagatcgaT
GATTATCTTGAACTGCTAAAAGATAATCCCCCGTCGGAAGCTGGTGGATC
AGATTGGCTACTTGGAAAATTCCTCCGAATGGACGAAGCACAAAAGGAAA
TCACCAAGGAGCTTGAAAATTTGGTTCCAATCACAACACAACCGGCAAGC
ACACTAAACGTATCTGCACCAG
Run BLAST on NCBI

protein sequence of TCONS_00038313-protein

>TCONS_00038313-protein ID=TCONS_00038313-protein|Name=TCONS_00038313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSFTSETGDQMSMDLKIASLRRKRGGKKGSITKRINLIEEIMKMNGSRTR
IRSLYDSMILVLEEAHVINQKLEDLGDDTEGWMDDMKFQTDNIKSKIDDY
LELLKDNPPSEAGGSDWLLGKFLRMDEAQKEITKELENLVPITTQPASTL
NVSAP
Run BLAST on NCBI

transcript from alignment at sc0001824:15002..16018+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038313 ID=TCONS_00038313|Name=TCONS_00038313|organism=Clytia hemisphaerica|type=transcript|length=1017bp|location=Sequence derived from alignment at sc0001824:15002..16018+ (Clytia hemisphaerica)
AACAACTGGAAACAATCTGGTGTTTTCAGTTCGAGTCAAGCTAACGTTAC
CTTGGTACAGACCGCTGCTTGCACGTCGGTACAACTGCTTCGACTCTAGC
TGTTAAGTCAACACATCAACAGAGTTTTTTGGTTAGGCTCTATTCACACT
TCAACTTCGAGCTGTCAAGTCAACAACTGGAAACAATCTGGTGTTTTCAG
TTCGAGTCAAGTTAACGTTACCTTGGTACAGACCGCTGCATGCACGTCGG
TACAACTGCTTCGACTCTAGCTGTCAAGTCAACACATCAACAGAGAGCTT
GTTGGTTAGGCTCtattcacactttcaacttcgAGCTGTCAAGTCAACAA
CTGGAAACAATCTGGTGTTTTCAGTTCGAGTCAAGCTTACGTTACCTTGA
TACAGACCGCTGCTTGCATGTCGGTACAACCGCTTCGACTCTAGCTTTCA
AGTCAACACATCAACAGAGAGCTTGTTGGTTAGGCTCCATTCACATTTTC
AACTTCGATCGTCGCTGACAAAATCAACTGCTCACATTCAACCACCAAAC
GATGTCTTTCACTAGTGAAACTGGAGACCAGATGTCTATGGATCTGAAGA
TAGCGAGTCTTCGCAGAAAACGAGGAGGAAAGAAAGGCTCAATAACCAAA
CGAATCAACTTGATTGAGGAAATTATGAAGATGAATGGCAGTCGTACCAG
AATTCGCTCATTGTACGACTCGATGATTCTTGTTTTGGAAGAAGCTCACG
TCATCAACCAAAAACTTGAAGATCTTGGTGATGATACAGAAGGATGGATG
GATGACATGAAGTTTCAAACCGacaacatcaaatcaaagatcgaTGATTA
TCTTGAACTGCTAAAAGATAATCCCCCGTCGGAAGCTGGTGGATCAGATT
GGCTACTTGGAAAATTCCTCCGAATGGACGAAGCACAAAAGGAAATCACC
AAGGAGCTTGAAAATTTGGTTCCAATCACAACACAACCGGCAAGCACACT
AAACGTATCTGCACCAG

Coding sequence (CDS) from alignment at sc0001824:15002..16018+

>TCONS_00038313 ID=TCONS_00038313|Name=TCONS_00038313|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0001824:15002..16018+ (Clytia hemisphaerica)
ATGTCTTTCACTAGTGAAACTGGAGACCAGATGTCTATGGATCTGAAGAT
AGCGAGTCTTCGCAGAAAACGAGGAGGAAAGAAAGGCTCAATAACCAAAC
GAATCAACTTGATTGAGGAAATTATGAAGATGAATGGCAGTCGTACCAGA
ATTCGCTCATTGTACGACTCGATGATTCTTGTTTTGGAAGAAGCTCACGT
CATCAACCAAAAACTTGAAGATCTTGGTGATGATACAGAAGGATGGATGG
ATGACATGAAGTTTCAAACCGacaacatcaaatcaaagatcgaTGATTAT
CTTGAACTGCTAAAAGATAATCCCCCGTCGGAAGCTGGTGGATCAGATTG
GCTACTTGGAAAATTCCTCCGAATGGACGAAGCACAAAAGGAAATCACCA
AGGAGCTTGAAAATTTGGTTCCAATCACAACACAACCGGCAAGCACACTA
AACGTATCTGCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022923XLOC_022923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038313-exon-sc0001824-1491911889:15002..15115TCONS_00038313-exon-sc0001824-1491911889:15002..15115Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1510915933:15002..15115TCONS_00038313-exon-sc0001824-1510915933:15002..15115Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1575043694:15002..15115TCONS_00038313-exon-sc0001824-1575043694:15002..15115Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1491911889:15287..15310TCONS_00038313-exon-sc0001824-1491911889:15287..15310Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1510915933:15287..15310TCONS_00038313-exon-sc0001824-1510915933:15287..15310Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1575043694:15287..15310TCONS_00038313-exon-sc0001824-1575043694:15287..15310Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1491911889:15485..16018TCONS_00038313-exon-sc0001824-1491911889:15485..16018Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1510915933:15485..16018TCONS_00038313-exon-sc0001824-1510915933:15485..16018Clytia hemisphaericaexon
TCONS_00038313-exon-sc0001824-1575043694:15485..16018TCONS_00038313-exon-sc0001824-1575043694:15485..16018Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038313-proteinTCONS_00038313-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001824supercontigsc0001824:15002..16018 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536258	0	0	0	0	0	0.717709	0	0.180973	0.0213798	0	0.715999	0	0.850194	0	0	0	0	0	0	0.135869	0	0	0	0	0	0	0	5.98764e-06	0.304174
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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