TCONS_00038312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038312
Unique NameTCONS_00038312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038312 ID=TCONS_00038312|Name=TCONS_00038312|organism=Clytia hemisphaerica|type=transcript|length=455bp
gtttaaaatctttttcatatttgtgatttaatttacaatttttaaaatcc
atttttatatattttcctaACATAATACAAAGCGAAGAGCAACTTAATAA
ATATTGAACGGCATTGGTAAAGTCCTGTCATTTCAATTTAATGCATTTCC
ATCTTCGAAGGAGATCCAGGGACACCATATCTTTTAGAACCACTTCGACG
GCGGCGTAAACCAATAAAAACCAAGAGAGAACATACAAAAGTCAACATCA
CTAAAATGATTGCAATGAGAATGATATTGGTCGTGGTTTGAAAGAATTGA
GTATTGTTGGATGATTCTTGGGTGTCTTGTTGGAATGAGTTGTCGTCACC
TAGGAATATTGAAGATTGGATGATTATAAGCTCCCTGTGCAGTACGAAAA
GGAAAACGTCCGCACGACTCTCTCTGCTCGATTTAGagtcccggtggaac
ttttc
Run BLAST on NCBI

protein sequence of TCONS_00038312-protein

>TCONS_00038312-protein ID=TCONS_00038312-protein|Name=TCONS_00038312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
EKFHRDSKSSRESRADVFLFVLHRELIIIQSSIFLGDDNSFQQDTQESSN
NTQFFQTTTNIILIAIILVMLTFVCSLLVFIGLRRRRSGSKRYGVPGSPS
KMEMH
Run BLAST on NCBI

transcript from alignment at sc0001823:31475..31929

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038312 ID=TCONS_00038312|Name=TCONS_00038312|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at sc0001823:31475..31929 (Clytia hemisphaerica)
gaaaagttccaccgggactCTAAATCGAGCAGAGAGAGTCGTGCGGACGT
TTTCCTTTTCGTACTGCACAGGGAGCTTATAATCATCCAATCTTCAATAT
TCCTAGGTGACGACAACTCATTCCAACAAGACACCCAAGAATCATCCAAC
AATACTCAATTCTTTCAAACCACGACCAATATCATTCTCATTGCAATCAT
TTTAGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTTTTATTGGTTTAC
GCCGCCGTCGAAGTGGTTCTAAAAGATATGGTGTCCCTGGATCTCCTTCG
AAGATGGAAATGCATTAAATTGAAATGACAGGACTTTACCAATGCCGTTC
AATATTTATTAAGTTGCTCTTCGCTTTGTATTATGTtaggaaaatatata
aaaatggattttaaaaattgtaaattaaatcacaaatatgaaaaagattt
taaac

Coding sequence (CDS) from alignment at sc0001823:31475..31929

>TCONS_00038312 ID=TCONS_00038312|Name=TCONS_00038312|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0001823:31475..31929 (Clytia hemisphaerica)
gaaaagttccaccgggactCTAAATCGAGCAGAGAGAGTCGTGCGGACGT
TTTCCTTTTCGTACTGCACAGGGAGCTTATAATCATCCAATCTTCAATAT
TCCTAGGTGACGACAACTCATTCCAACAAGACACCCAAGAATCATCCAAC
AATACTCAATTCTTTCAAACCACGACCAATATCATTCTCATTGCAATCAT
TTTAGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTTTTATTGGTTTAC
GCCGCCGTCGAAGTGGTTCTAAAAGATATGGTGTCCCTGGATCTCCTTCG
AAGATGGAAATGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022922XLOC_022922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038312-exon-sc0001823-1491911889:31475..31929TCONS_00038312-exon-sc0001823-1491911889:31475..31929Clytia hemisphaericaexon
TCONS_00038312-exon-sc0001823-1510915933:31475..31929TCONS_00038312-exon-sc0001823-1510915933:31475..31929Clytia hemisphaericaexon
TCONS_00038312-exon-sc0001823-1575043694:31475..31929TCONS_00038312-exon-sc0001823-1575043694:31475..31929Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038312-proteinTCONS_00038312-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001823supercontigsc0001823:31475..31929 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
760.564	713.61	695.338	634.749	2.06227	2.72101	0.239608	1.76119	0.884143	3.08367	0	0.432032	0.179991	0.075019	0	0.584	0.387991	0.543438	0.153307	0.160425	0.72789	1.50642	184.636	145.214	0.919573	0.309632	5.81743	6.50886	82.6793	87.1346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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